Factsheet for Bra034794.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08473	Canola	nucleus	96.14	97.07
Zm00001d029629_P001	Maize	nucleus	14.01	64.44
Os03t0374575-01	Rice	nucleus	65.7	62.67
Os07t0633200-02	Rice	nucleus	64.25	62.44
Zm00001d022243_P002	Maize	nucleus	62.8	62.2
EER92211	Sorghum	nucleus	63.77	61.97
EER97602	Sorghum	nucleus	62.32	61.72
GSMUA_Achr4P13560_001	Banana	nucleus	64.25	61.29
Zm00001d047401_P001	Maize	nucleus	61.35	58.8
TraesCS2D01G160400.1	Wheat	nucleus	57.97	58.54
TraesCS2A01G155100.1	Wheat	nucleus	57.97	58.54
TraesCS2B01G180200.1	Wheat	nucleus	57.97	57.97
HORVU2Hr1G028210.9	Barley	nucleus	57.97	57.69
GSMUA_Achr9P21660_001	Banana	nucleus	65.22	55.1
Zm00001d004470_P001	Maize	nucleus	28.99	54.05
Zm00001d019443_P002	Maize	nucleus	27.54	53.77
Bra039394.1-P	Field mustard	nucleus	62.8	49.43
Zm00001d005285_P001	Maize	nucleus	33.33	48.25
Zm00001d016504_P001	Maize	nucleus	17.39	48.0
Zm00001d029305_P001	Maize	nucleus	35.27	44.51
Zm00001d010881_P001	Maize	nucleus	36.72	41.53
Bra011910.1-P	Field mustard	nucleus	63.28	41.07
Bra037991.1-P	Field mustard	nucleus	46.38	38.87
Zm00001d005739_P004	Maize	cytosol	19.32	36.36
Zm00001d043759_P001	Maize	cytosol	26.09	35.06
Zm00001d012570_P002	Maize	extracellular	27.05	34.36
Zm00001d015189_P001	Maize	nucleus	28.99	34.09
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	46.86	32.88
Zm00001d010176_P001	Maize	cytosol	16.91	30.7
Bra030870.1-P	Field mustard	plastid	25.6	29.28
Zm00001d004722_P001	Maize	cytosol	14.01	27.36
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	28.5	27.31
Bra024276.1-P	Field mustard	nucleus	33.82	25.0

Protein Annotations

MapMan:16.4.6.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra034794	EnsemblPlants:Bra034794.1	EnsemblPlants:Bra034794.1-P	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016607	InterPro:IPR000504
InterPro:IPR012677	UniProt:M4F148	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23147
PANTHER:PTHR23147:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000254748C
SEG:seg	:	:	:	:	:

Description

AT1G55310 (E=2e-024) SR33, ATSCL33, SCL33 | SR33; RNA binding / protein binding

Coordinates

chrA05:-:21427272..21428696

Molecular Weight (calculated)

24491.4 Da

IEP (calculated)

11.313

GRAVY (calculated)

-1.450

Length

207 amino acids

Sequence
(BLAST)

001: MGRSYSYSPS PPRRRYRSPS PVGYYKGRSR DAPTSLLVRN LRLDCRPDDL RRPFGRFGRL KDIYIPRNYY TGEPRGFGFV QYYDPADAAD AKYRLDGYVL
101: LGREITVVFA EENRKKPSEM RERSRGRTST RSPHGYSRSP GYSRSPNYRR SYSRSPVYRR SYSRSPYDER RRSRSVSPED RKRSYSRSSS RSRYESRSRS
201: QSPGYSR

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.