Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02449 | Canola | nucleus | 59.12 | 46.12 |
| Bra034794.1-P | Field mustard | nucleus | 29.28 | 25.6 |
| CDY10571 | Canola | nucleus | 47.51 | 25.52 |
| Bra037991.1-P | Field mustard | nucleus | 34.81 | 25.51 |
| Bra039394.1-P | Field mustard | nucleus | 36.46 | 25.1 |
| Solyc01g005820.2.1 | Tomato | nucleus | 33.7 | 24.21 |
| PGSC0003DMT400081835 | Potato | nucleus | 33.15 | 24.19 |
| AT1G55310.3 | Thale cress | nucleus | 38.12 | 23.08 |
| PGSC0003DMT400010908 | Potato | nucleus | 35.36 | 22.86 |
| Bra011910.1-P | Field mustard | nucleus | 34.81 | 19.75 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 29.83 | 18.88 |
| Bra014741.1-P | Field mustard | mitochondrion, nucleus, plastid | 24.86 | 15.25 |
| Bra024276.1-P | Field mustard | nucleus | 13.26 | 8.57 |
Protein Annotations
| EnsemblPlants:Bra030870.1 | EnsemblPlants:Bra030870.1-P | EnsemblPlantsGene:Bra030870 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | PFAM:PF00076 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000254723B | UniProt:M4EPZ9 | MapMan:35.2 | : | : | : |
Description
AT1G55310 (E=7e-011) SR33, ATSCL33, SCL33 | SR33; RNA binding / protein binding
Coordinates
chrA08:-:399999..401813
Molecular Weight (calculated)
20021.7 Da
IEP (calculated)
11.037
GRAVY (calculated)
-1.004
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYIPSP SQSPPRGHGR RGRSPSPSPR GGGRYRARSR DLRTSLFVRQ LSRDCREGDL RKSFKQFGPL KDIHLPTDHR TGGCHIANCS STEACVVKWL
101: HLRGKKDMIG GGGPTHAHPP AMAQGVAVQV QPQEKKEQHL YQRAETGVGD LREEGATHLY HQREAAAHVG SNRKTVHQAS D
101: HLRGKKDMIG GGGPTHAHPP AMAQGVAVQV QPQEKKEQHL YQRAETGVGD LREEGATHLY HQREAAAHVG SNRKTVHQAS D
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.