Factsheet for Bra037991.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24043	Canola	nucleus	91.5	79.58
AT1G55310.3	Thale cress	nucleus	77.33	63.88
Bra039394.1-P	Field mustard	nucleus	61.94	58.17
Bra011910.1-P	Field mustard	nucleus	74.9	57.99
PGSC0003DMT400081835	Potato	nucleus	49.39	49.19
Solyc01g005820.2.1	Tomato	nucleus	49.39	48.41
Bra034794.1-P	Field mustard	nucleus	38.87	46.38
PGSC0003DMT400010908	Potato	nucleus	49.8	43.93
Bra030870.1-P	Field mustard	plastid	25.51	34.81
KRH38014	Soybean	endoplasmic reticulum, nucleus	38.46	33.22
Bra014741.1-P	Field mustard	mitochondrion, nucleus, plastid	36.84	30.85
Bra024276.1-P	Field mustard	nucleus	26.72	23.57

Protein Annotations

EnsemblPlants:Bra037991.1	EnsemblPlants:Bra037991.1-P	EnsemblPlantsGene:Bra037991	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR23147	PANTHER:PTHR23147:SF41	PFAM:PF00076	SEG:seg	SUPFAM:SSF54928	UniParc:UPI000253EE3B
UniProt:M4FA77	MapMan:35.2	:	:	:	:

Description

AT1G55310 (E=3e-018) SR33, ATSCL33, SCL33 | SR33; RNA binding / protein binding

Coordinates

chrA06:-:260134..261976

Molecular Weight (calculated)

28208.0 Da

IEP (calculated)

12.353

GRAVY (calculated)

-1.535

Length

247 amino acids

Sequence
(BLAST)

001: MRGRSYTPSP PRGGYGRRGR SPSPRGRYGG GRSSRDLPTS LLVRNLRHDC RQDDLRRSFE QFGPLKDIYL PRDYYTGGST VPQHACCEVV HLRLHFCMRR
101: SPPRYSRSPP RRRGRSRSRS GDYYSPPRRH HPRSISPRGE RYDRGRSYSR SPAYNGSRGR SVTPARGKSR SISRSPRSTS RSPRGGGISP SPRRSISRSP
201: SPRRSISRSP RGSRSPSPRR SRSYTPEQAR SRSPPRGEQY EDRSPSQ

Best Arabidopsis Sequence Match ( AT1G55310.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ

Arabidopsis Description

SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.