CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92904
KRG95876
KRG95883
KRG96443
KRG99320
KRH01744
KRH02172
KRH06424
KRH15102
KRH38014
KRH42160
KRH42195
KRH45698
KRH46935
KRH47859
KRH50944
KRH58277
KRH58317
KRH67593
KRH67596
KRH68188
KRH73034

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	KRG96443	AT1G02840.1	18674533
AT3G13570.1	KRH68188	AT1G02840.1	18674533
AT3G13570.1	KRG92904	AT1G09140.1	18674533
AT3G13570.1	KRG99320	AT1G23860.1	18674533
AT3G13570.1	KRH45698	AT1G23860.1	18674533
AT3G13570.1	KRG95876	AT2G37340.1	18674533
AT3G13570.1	KRG95883	AT2G37340.1	18674533
AT3G13570.1	KRH42195	AT2G37340.1	18674533
AT3G13570.1	KRH58317	AT2G37340.1	18674533
AT3G13570.1	KRH67593	AT2G37340.1	18674533
AT3G13570.1	KRH67596	AT2G37340.1	18674533
AT3G13570.1	KRH01744	AT2G43370.1	15987817
AT3G13570.1	KRH46935	AT2G43370.1	15987817
AT3G13570.1	KRH38014	AT3G13570.1	18674533
AT3G13570.1	KRH15102	AT3G55460.1	18674533
AT3G13570.1	KRH73034	AT3G55460.1	18674533
AT3G13570.1	KRH06424	AT3G61860.1	18674533
AT3G13570.1	KRH47859	AT3G61860.1	18674533
AT3G13570.1	KRH02172	AT5G18810.1	18674533
AT3G13570.1	KRH50944	AT5G18810.1	18674533
AT3G13570.1	KRH42160	AT5G64200.2	18674533
AT3G13570.1	KRH58277	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029629_P001	Maize	nucleus	10.84	68.89
GSMUA_Achr4P13560_001	Banana	nucleus	49.3	64.98
Os03t0374575-01	Rice	nucleus	46.85	61.75
EER92211	Sorghum	nucleus	44.76	60.09
Zm00001d047401_P001	Maize	nucleus	44.76	59.26
EER97602	Sorghum	nucleus	42.66	58.37
Zm00001d022243_P002	Maize	nucleus	41.96	57.42
TraesCS2D01G160400.1	Wheat	nucleus	40.91	57.07
TraesCS2A01G155100.1	Wheat	nucleus	40.91	57.07
TraesCS2B01G180200.1	Wheat	nucleus	40.91	56.52
Os07t0633200-02	Rice	nucleus	41.96	56.34
KRH16958	Soybean	nucleus	48.6	55.82
HORVU2Hr1G028210.9	Barley	nucleus	40.56	55.77
GSMUA_Achr9P21660_001	Banana	nucleus	47.55	55.51
PGSC0003DMT400081835	Potato	nucleus	47.9	55.24
Zm00001d004470_P001	Maize	nucleus	21.33	54.95
Solyc01g005820.2.1	Tomato	nucleus	48.25	54.76
KRH72576	Soybean	nucleus	47.9	54.15
Zm00001d019443_P002	Maize	nucleus	19.58	52.83
CDY24176	Canola	nucleus	47.55	52.11
Bra039394.1-P	Field mustard	nucleus	47.9	52.09
CDY07084	Canola	nucleus	47.9	52.09
AT3G13570.1	Thale cress	nucleus	45.8	50.0
Zm00001d005285_P001	Maize	nucleus	24.48	48.95
CDY24043	Canola	nucleus	48.25	48.59
CDY33060	Canola	nucleus	46.85	46.69
Zm00001d016504_P001	Maize	nucleus	12.24	46.67
PGSC0003DMT400010908	Potato	nucleus	45.45	46.43
AT1G55310.3	Thale cress	nucleus	48.25	46.15
CDY26110	Canola	mitochondrion, nucleus	47.2	45.45
CDY08236	Canola	nucleus	47.2	42.45
Bra011910.1-P	Field mustard	nucleus	47.2	42.32
Zm00001d010881_P001	Maize	nucleus	26.92	42.08
Zm00001d005739_P004	Maize	cytosol	16.08	41.82
Zm00001d029305_P001	Maize	nucleus	23.43	40.85
CDY02449	Canola	nucleus	32.17	39.66
KRH02172	Soybean	nucleus	34.62	39.6
KRH50944	Soybean	nucleus	33.57	39.51
Bra037991.1-P	Field mustard	nucleus	33.22	38.46
Zm00001d043759_P001	Maize	cytosol	19.23	35.71
KRH15102	Soybean	nucleus	33.57	35.42
KRH73034	Soybean	nucleus	33.92	35.14
Zm00001d015189_P001	Maize	nucleus	20.98	34.09
Zm00001d012570_P002	Maize	extracellular	19.23	33.74
CDY10571	Canola	nucleus	37.06	31.45
Bra030870.1-P	Field mustard	plastid	18.88	29.83
Zm00001d010176_P001	Maize	cytosol	10.49	26.32
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	19.23	25.46
KRH58277	Soybean	nucleus	22.73	24.34
KRH42160	Soybean	nucleus	22.73	24.34
Zm00001d004722_P001	Maize	cytosol	8.39	22.64

Protein Annotations

EntrezGene:100816913	MapMan:16.4.6.2	Gene3D:3.30.70.330	UniProt:A0A0R0I6L4	EMBL:ACUP02005583	EnsemblPlantsGene:GLYMA_09G104200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH38014	ProteinID:KRH38014	ProteinID:KRH38014.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR23147	PANTHER:PTHR23147:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0006ED9D5C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:19418779..19422428

Molecular Weight (calculated)

33153.1 Da

IEP (calculated)

11.001

GRAVY (calculated)

-1.032

Length

286 amino acids

Sequence
(BLAST)

001: MSGISVHLGY FGVQKAKDGF KEVITLIGRS FSNIEVRLQI SGIHLRFRTT KQSPPPLSLG VWNRDCVCFA NCEAAGEIAP NMRGRSCSYS PSPSPPRRYS
101: RRRHSLSPRG RYRGCDRDLP TSLLVRNLNR DCRPEDLHGP FGQFGPLKDV YLPRDYYTGE PRGFGFVQYV DPADAADAKY HMDGRILLGR EITVVFAEEN
201: RKKPAEMRAR EHRRDRSHDY RRSSRTYSPS PDYSPSPRRR RHYRSISPRD RKYRDRSYSR SSYASRSRSR SRSYNRSLSR SPGYSR

Best Arabidopsis Sequence Match ( AT1G55310.2 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPTQEEA

Arabidopsis Description

SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.