Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030870.1-P | Field mustard | plastid | 46.12 | 59.12 |
| CDY10571 | Canola | nucleus | 72.41 | 49.85 |
| CDY08473 | Canola | nucleus | 40.09 | 45.37 |
| CDY24176 | Canola | nucleus | 47.84 | 42.53 |
| CDY07084 | Canola | nucleus | 47.84 | 42.21 |
| PGSC0003DMT400081835 | Potato | nucleus | 42.67 | 39.92 |
| CDY24043 | Canola | nucleus | 48.28 | 39.44 |
| Solyc01g005820.2.1 | Tomato | nucleus | 42.67 | 39.29 |
| CDY01078 | Canola | nucleus | 40.09 | 39.08 |
| CDY33060 | Canola | nucleus | 48.28 | 39.02 |
| AT1G55310.3 | Thale cress | nucleus | 49.57 | 38.46 |
| PGSC0003DMT400010908 | Potato | nucleus | 45.69 | 37.86 |
| CDY26110 | Canola | mitochondrion, nucleus | 46.98 | 36.7 |
| CDY08236 | Canola | nucleus | 47.84 | 34.91 |
| CDY02941 | Canola | nucleus | 39.22 | 32.73 |
| CDX76092 | Canola | plastid | 39.22 | 32.27 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 39.66 | 32.17 |
| CDX84503 | Canola | nucleus | 15.95 | 13.65 |
| CDY43799 | Canola | vacuole | 12.5 | 8.98 |
Protein Annotations
| EnsemblPlants:CDY02449 | EnsemblPlantsGene:GSBRNA2T00114072001 | Gene3D:3.30.70.330 | GO:A0A078EP57 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY02449 | ProteinID:CDY02449.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDE37D | MapMan:35.1 | : |
Description
BnaA08g00560D
Coordinates
chrLK031935:-:68932..71118
Molecular Weight (calculated)
26565.1 Da
IEP (calculated)
11.798
GRAVY (calculated)
-1.356
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYTLSP SPPRGHGRRG RSPSPSPRGG GRYRARSSLF VCQLSRDCRE GDLRKSFKQF GPLKDIHLPR DHRTGGYHIA NYSSTEACVV KYQRRFGFVQ
101: FEDPADAAEA KDHMDGYVLL GRKMAVEFAE NNRKTPTKMR AKQRGDGRFR DRRRSSPRYH SRSPMSSRSP SPYRRRHSSR RKEGYDRRRR SYSRSPASNG
201: SRGRSASPAT REEGATHLYQ RAETGTVHQA SD
101: FEDPADAAEA KDHMDGYVLL GRKMAVEFAE NNRKTPTKMR AKQRGDGRFR DRRRSSPRYH SRSPMSSRSP SPYRRRHSSR RKEGYDRRRR SYSRSPASNG
201: SRGRSASPAT REEGATHLYQ RAETGTVHQA SD
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.