Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039394.1-P | Field mustard | nucleus | 99.62 | 99.62 |
| CDY24176 | Canola | nucleus | 98.48 | 99.23 |
| AT3G13570.1 | Thale cress | nucleus | 88.97 | 89.31 |
| CDY24043 | Canola | nucleus | 75.29 | 69.72 |
| CDY33060 | Canola | nucleus | 74.14 | 67.94 |
| PGSC0003DMT400081835 | Potato | nucleus | 61.6 | 65.32 |
| Solyc01g005820.2.1 | Tomato | nucleus | 62.36 | 65.08 |
| CDY26110 | Canola | mitochondrion, nucleus | 71.86 | 63.64 |
| CDY08473 | Canola | nucleus | 48.29 | 61.95 |
| CDY08236 | Canola | nucleus | 74.14 | 61.32 |
| PGSC0003DMT400010908 | Potato | nucleus | 63.5 | 59.64 |
| CDY01078 | Canola | nucleus | 49.43 | 54.62 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 52.09 | 47.9 |
| CDY02449 | Canola | nucleus | 42.21 | 47.84 |
| CDY02941 | Canola | nucleus | 44.49 | 42.09 |
| CDX76092 | Canola | plastid | 44.49 | 41.49 |
| CDY10571 | Canola | nucleus | 49.81 | 38.87 |
| CDX84503 | Canola | nucleus | 23.57 | 22.88 |
| CDY43799 | Canola | vacuole | 18.25 | 14.86 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | GO:A0A078F2F0 | EnsemblPlants:CDY07084 | ProteinID:CDY07084 | ProteinID:CDY07084.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00123417001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE4A48 | SEG:seg | : |
Description
BnaCnng00990D
Coordinates
chrLK031975:+:17817..19932
Molecular Weight (calculated)
30550.6 Da
IEP (calculated)
12.039
GRAVY (calculated)
-1.705
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGG GGRDRDLPTS LLVRNLRHDC RQEDLRRPFE QFGPVKDIYL PRDYYTGDPR GFGFIQYVDP ADAAEAKHHM
101: EGYLLLGREL TVVFAEENRK KPTEMRTRDR GGRSNRFNDR RRSPPRYSRS PPPRRGGRTR SRSREYNSPP PKRHQSRSVS PQERRYEKER SYSRSPPRNG
201: SRARSGSHEK AKKSYSRSRS PRRSVSPRRN RSYTPEQARS PVPRQSRSPS PRGERNGDRS PSQ
101: EGYLLLGREL TVVFAEENRK KPTEMRTRDR GGRSNRFNDR RRSPPRYSRS PPPRRGGRTR SRSREYNSPP PKRHQSRSVS PQERRYEKER SYSRSPPRNG
201: SRARSGSHEK AKKSYSRSRS PRRSVSPRRN RSYTPEQARS PVPRQSRSPS PRGERNGDRS PSQ
001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ
Arabidopsis Description
SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.