Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24043 | Canola | nucleus | 94.77 | 95.77 |
| AT1G55310.3 | Thale cress | nucleus | 82.58 | 79.26 |
| CDY26110 | Canola | mitochondrion, nucleus | 81.18 | 78.45 |
| CDY24176 | Canola | nucleus | 67.94 | 74.71 |
| CDY07084 | Canola | nucleus | 67.94 | 74.14 |
| CDY08236 | Canola | nucleus | 81.88 | 73.9 |
| PGSC0003DMT400081835 | Potato | nucleus | 57.14 | 66.13 |
| Solyc01g005820.2.1 | Tomato | nucleus | 57.14 | 65.08 |
| CDY08473 | Canola | nucleus | 45.3 | 63.41 |
| PGSC0003DMT400010908 | Potato | nucleus | 56.79 | 58.21 |
| CDY01078 | Canola | nucleus | 46.34 | 55.88 |
| CDY02449 | Canola | nucleus | 39.02 | 48.28 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 46.69 | 46.85 |
| CDY02941 | Canola | nucleus | 40.42 | 41.73 |
| CDX76092 | Canola | plastid | 40.77 | 41.49 |
| CDY10571 | Canola | nucleus | 45.3 | 38.58 |
| CDX84503 | Canola | nucleus | 22.3 | 23.62 |
| CDY43799 | Canola | vacuole | 17.77 | 15.79 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | GO:A0A078H383 | UniProt:A0A078H383 | EnsemblPlants:CDY33060 | ProteinID:CDY33060 |
| ProteinID:CDY33060.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00053679001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR23147 |
| PANTHER:PTHR23147:SF41 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EC062A |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g07190DBnaC06g07190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H383]
Coordinates
chrLK032305:-:68398..70449
Molecular Weight (calculated)
32589.1 Da
IEP (calculated)
12.268
GRAVY (calculated)
-1.492
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGRSYTPSP PRGGYGRRGR SPSPRGGGGG RYGGGRSRDL PTSLLVRNLR HNCRQDDLRR SFEQFGPLKD IYLPRDYYTG NPRGFGFVQF VDPADAAEAK
101: YHMDGYVLHG RELTVVFAEE NRKKPTEMRA RERGGVRRRS PPRYSRSPPR RRGRSRSRSG GYYSPPRRHH PRSISPREER YDRGRSYSRS PAYNGSSGRS
201: VTPARGKSRS ISRSPRRSIS PSPRRGGISP SPRRSISRSP SPRRSISHSP RGNRSPSPRR SRSCTPEQAR SRSPPRGEQY EDRSPSQ
101: YHMDGYVLHG RELTVVFAEE NRKKPTEMRA RERGGVRRRS PPRYSRSPPR RRGRSRSRSG GYYSPPRRHH PRSISPREER YDRGRSYSRS PAYNGSSGRS
201: VTPARGKSRS ISRSPRRSIS PSPRRGGISP SPRRSISRSP SPRRSISHSP RGNRSPSPRR SRSCTPEQAR SRSPPRGEQY EDRSPSQ
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.