Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43799 | Canola | vacuole | 82.66 | 69.35 |
| Bra024276.1-P | Field mustard | nucleus | 68.27 | 66.07 |
| VIT_18s0001g05550.t01 | Wine grape | nucleus | 49.08 | 51.75 |
| AT5G64200.2 | Thale cress | nucleus | 57.2 | 51.16 |
| GSMUA_Achr10P... | Banana | nucleus | 43.91 | 50.21 |
| KRH58277 | Soybean | nucleus | 49.45 | 50.19 |
| KRH42160 | Soybean | nucleus | 49.45 | 50.19 |
| PGSC0003DMT400045694 | Potato | nucleus | 46.49 | 48.84 |
| Solyc04g074040.2.1 | Tomato | nucleus | 46.13 | 48.45 |
| Solyc01g105140.2.1 | Tomato | nucleus | 44.28 | 47.24 |
| PGSC0003DMT400032709 | Potato | nucleus | 43.91 | 46.85 |
| HORVU2Hr1G029640.1 | Barley | mitochondrion | 23.62 | 46.04 |
| VIT_12s0142g00110.t01 | Wine grape | nucleus | 42.44 | 45.1 |
| KXG36736 | Sorghum | nucleus | 40.59 | 44.0 |
| Zm00001d006906_P010 | Maize | mitochondrion | 39.11 | 42.06 |
| Os07t0623300-01 | Rice | nucleus | 42.07 | 41.45 |
| HORVU2Hr1G029630.1 | Barley | plastid | 20.66 | 41.18 |
| TraesCS2D01G169700.5 | Wheat | nucleus | 41.7 | 41.09 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 40.96 | 40.81 |
| Zm00001d022189_P002 | Maize | nucleus | 37.27 | 39.76 |
| KXG39239 | Sorghum | nucleus | 33.21 | 38.14 |
| TraesCS2A01G162700.3 | Wheat | nucleus | 28.78 | 32.77 |
| CDY02941 | Canola | nucleus | 25.46 | 24.82 |
| CDX76092 | Canola | plastid | 25.46 | 24.47 |
| CDY08473 | Canola | nucleus | 18.08 | 23.9 |
| CDY24176 | Canola | nucleus | 22.88 | 23.75 |
| CDY07084 | Canola | nucleus | 22.88 | 23.57 |
| CDY24043 | Canola | nucleus | 24.35 | 23.24 |
| CDY33060 | Canola | nucleus | 23.62 | 22.3 |
| CDY26110 | Canola | mitochondrion, nucleus | 22.51 | 20.54 |
| CDY01078 | Canola | nucleus | 17.71 | 20.17 |
| CDY08236 | Canola | nucleus | 22.88 | 19.5 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 28.04 | 17.59 |
| CDY10571 | Canola | nucleus | 20.3 | 16.32 |
| CDY02449 | Canola | nucleus | 13.65 | 15.95 |
Protein Annotations
| EnsemblPlants:CDX84503 | EnsemblPlantsGene:GSBRNA2T00141729001 | Gene3D:3.30.70.330 | GO:A0A078DAZ2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF42 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX84503 | ProteinID:CDX84503.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE4472 | MapMan:35.1 | : |
Description
BnaC03g49970D
Coordinates
chrLK031837:-:1493869..1496081
Molecular Weight (calculated)
30335.7 Da
IEP (calculated)
10.981
GRAVY (calculated)
-0.932
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FLTKLWKGLM DERLMAEKSL FSLLNTALMR RRFPKEELWN
101: HLQGHGGQEA VVLEGAVALI DAVVLGEAAV PAGGPEMITG KETTGRGAEV EAMKGRDRHH DKDRDYRRRS RSRSASPDDK RRVRGRYDDE RRSRSCSLSA
201: SPARRSPSPR SASPLKASPE RRSKERSLTP ASRSRSPRSP SLEKASPERK SNDRSPSPRD TARSQSPNAE E
101: HLQGHGGQEA VVLEGAVALI DAVVLGEAAV PAGGPEMITG KETTGRGAEV EAMKGRDRHH DKDRDYRRRS RSRSASPDDK RRVRGRYDDE RRSRSCSLSA
201: SPARRSPSPR SASPLKASPE RRSKERSLTP ASRSRSPRSP SLEKASPERK SNDRSPSPRD TARSQSPNAE E
001: MSHFGRSGPP DISDTYSLLV LNITFRTTAD DLYPLFAKYG KVVDVFIPRD RRTGDSRGFA FVRYKYKDEA HKAVERLDGR VVDGREITVQ FAKYGPNAEK
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
101: ISKGRVVEPP PKSRRSRSRS PRRSRSPRRS RSPPRRRSPR RSRSPRRRSR DDYREKDYRK RSRSRSYDRR ERHEEKDRDH RRRTRSRSAS PDEKRRVRGR
201: YDNESRSHSR SLSASPARRS PRSSSPQKTS PAREVSPDKR SNERSPSPRR SLSPRSPALQ KASPSKEMSP ERRSNERSPS PGSPAPLRKV DAASRSQSPY
301: AAE
Arabidopsis Description
SC35Serine/arginine-rich splicing factor SC35 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.