Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08473 | Canola | nucleus | 82.77 | 96.1 |
| Zm00001d029629_P001 | Maize | nucleus | 12.61 | 66.67 |
| Os03t0374575-01 | Rice | nucleus | 57.56 | 63.13 |
| Os07t0633200-02 | Rice | nucleus | 55.88 | 62.44 |
| EER92211 | Sorghum | nucleus | 55.46 | 61.97 |
| EER97602 | Sorghum | nucleus | 54.2 | 61.72 |
| Zm00001d022243_P002 | Maize | nucleus | 53.78 | 61.24 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 55.46 | 60.83 |
| Zm00001d047401_P001 | Maize | nucleus | 52.94 | 58.33 |
| TraesCS2A01G155100.1 | Wheat | nucleus | 50.0 | 58.05 |
| TraesCS2D01G160400.1 | Wheat | nucleus | 50.0 | 58.05 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 50.42 | 57.97 |
| HORVU2Hr1G028210.9 | Barley | nucleus | 50.42 | 57.69 |
| Zm00001d004470_P001 | Maize | nucleus | 25.63 | 54.95 |
| Zm00001d019443_P002 | Maize | nucleus | 24.37 | 54.72 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 55.46 | 53.88 |
| CDY24176 | Canola | nucleus | 54.62 | 49.81 |
| CDY07084 | Canola | nucleus | 54.62 | 49.43 |
| Zm00001d005285_P001 | Maize | nucleus | 29.41 | 48.95 |
| Zm00001d016504_P001 | Maize | nucleus | 15.13 | 48.0 |
| CDY24043 | Canola | nucleus | 57.14 | 47.89 |
| CDY33060 | Canola | nucleus | 55.88 | 46.34 |
| Zm00001d029305_P001 | Maize | nucleus | 30.67 | 44.51 |
| CDY26110 | Canola | mitochondrion, nucleus | 53.78 | 43.1 |
| Zm00001d010881_P001 | Maize | nucleus | 32.35 | 42.08 |
| CDY08236 | Canola | nucleus | 54.62 | 40.88 |
| CDY02449 | Canola | nucleus | 39.08 | 40.09 |
| Zm00001d005739_P004 | Maize | cytosol | 17.23 | 37.27 |
| Zm00001d043759_P001 | Maize | cytosol | 23.11 | 35.71 |
| Zm00001d015189_P001 | Maize | nucleus | 25.63 | 34.66 |
| CDY02941 | Canola | nucleus | 39.92 | 34.17 |
| CDX76092 | Canola | plastid | 40.34 | 34.04 |
| Zm00001d012570_P002 | Maize | extracellular | 23.11 | 33.74 |
| Zm00001d010176_P001 | Maize | cytosol | 14.71 | 30.7 |
| CDY10571 | Canola | nucleus | 43.28 | 30.56 |
| Zm00001d004722_P001 | Maize | cytosol | 12.18 | 27.36 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 24.79 | 27.31 |
| CDX84503 | Canola | nucleus | 20.17 | 17.71 |
| CDY43799 | Canola | vacuole | 15.97 | 11.76 |
Protein Annotations
| EnsemblPlants:CDY01078 | EnsemblPlantsGene:GSBRNA2T00111123001 | Gene3D:3.30.70.330 | GO:A0A078ENJ7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR23147 | PANTHER:PTHR23147:SF41 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY01078 | ProteinID:CDY01078.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE04D1 | MapMan:16.4.6.2 | : |
Description
BnaC05g41220D
Coordinates
chrLK031923:+:1070930..1073316
Molecular Weight (calculated)
28344.0 Da
IEP (calculated)
11.189
GRAVY (calculated)
-1.444
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKYTGER TSSPLLWDSV IMGRSYSYRP SPPRRRYRSP SPVGYYKGRS RDAPTSLLVR NLRLDCRPDD LRRPFGRFGR LKDIYIPRNY YTGEPRGFGF
101: VQYYDPDDAA DAKYHLDGYV LLGREITVVF AEENRKKPSE MRERSRGRTS TRSPYGYSRS PGYSRSPNYR RSYSRSPNYR RSYSRSPVYR RTYSRSPYDE
201: RRRSRSVSPG DRRRSYSRSS SRSRYESRSR SQSPTYSR
101: VQYYDPDDAA DAKYHLDGYV LLGREITVVF AEENRKKPSE MRERSRGRTS TRSPYGYSRS PGYSRSPNYR RSYSRSPNYR RSYSRSPVYR RTYSRSPYDE
201: RRRSRSVSPG DRRRSYSRSS SRSRYESRSR SQSPTYSR
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGDPRGFG FVQFMDPADA ADAKHHMDGY
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
101: LLLGRELTVV FAEENRKKPT EMRARERGGG RFRDRRRTPP RYYSRSRSPP PRRGRSRSRS GDYYSPPPRR HHPRSISPRE ERYDGRRSYS RSPASDGSRG
201: RSLTPVRGKS RSLSPSPRRS ISRSPRRSRS PSPKRNRSVS PRRSISRSPR RSRSPRRSRR SYTPEPARSR SQSPHGGQYD EDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.