Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019443_P002 | Maize | nucleus | 91.11 | 38.68 |
| Zm00001d005739_P004 | Maize | cytosol | 91.11 | 37.27 |
| Zm00001d004470_P001 | Maize | nucleus | 80.0 | 32.43 |
| Zm00001d005285_P001 | Maize | nucleus | 86.67 | 27.27 |
| Zm00001d043759_P001 | Maize | cytosol | 84.44 | 24.68 |
| Zm00001d015189_P001 | Maize | nucleus | 88.89 | 22.73 |
| Zm00001d010881_P001 | Maize | nucleus | 86.67 | 21.31 |
| Zm00001d016504_P001 | Maize | nucleus | 33.33 | 20.0 |
| Zm00001d047401_P001 | Maize | nucleus | 82.22 | 17.13 |
| Zm00001d004722_P001 | Maize | cytosol | 40.0 | 16.98 |
| EER92211 | Sorghum | nucleus | 80.0 | 16.9 |
| Os03t0374575-01 | Rice | nucleus | 71.11 | 14.75 |
| CDY08473 | Canola | nucleus | 64.44 | 14.15 |
| Zm00001d029305_P001 | Maize | nucleus | 51.11 | 14.02 |
| Bra034794.1-P | Field mustard | nucleus | 64.44 | 14.01 |
| Zm00001d012570_P002 | Maize | extracellular | 48.89 | 13.5 |
| GSMUA_Achr4P13560_001 | Banana | nucleus | 64.44 | 13.36 |
| Zm00001d022243_P002 | Maize | nucleus | 60.0 | 12.92 |
| CDY01078 | Canola | nucleus | 66.67 | 12.61 |
| KRH16958 | Soybean | nucleus | 66.67 | 12.05 |
| GSMUA_Achr9P21660_001 | Banana | nucleus | 64.44 | 11.84 |
| KRH72576 | Soybean | nucleus | 64.44 | 11.46 |
| VIT_06s0004g00710.t01 | Wine grape | nucleus | 60.0 | 11.02 |
| KRH38014 | Soybean | endoplasmic reticulum, nucleus | 68.89 | 10.84 |
| Zm00001d010176_P001 | Maize | cytosol | 26.67 | 10.53 |
| PGSC0003DMT400081835 | Potato | nucleus | 55.56 | 10.08 |
| AT3G13570.1 | Thale cress | nucleus | 57.78 | 9.92 |
| Solyc01g005820.2.1 | Tomato | nucleus | 55.56 | 9.92 |
| PGSC0003DMT400010908 | Potato | nucleus | 60.0 | 9.64 |
| AT1G55310.3 | Thale cress | nucleus | 60.0 | 9.03 |
| Zm00001d029256_P002 | Maize | nucleus | 48.89 | 8.98 |
| Zm00001d013841_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 42.22 | 8.8 |
| Zm00001d048609_P001 | Maize | nucleus, plastid | 55.56 | 8.68 |
| Zm00001d030739_P002 | Maize | mitochondrion, nucleus, plastid | 53.33 | 6.5 |
| Zm00001d006906_P010 | Maize | mitochondrion | 33.33 | 5.95 |
| Zm00001d022189_P002 | Maize | nucleus | 33.33 | 5.91 |
| Zm00001d052803_P004 | Maize | nucleus | 31.11 | 4.65 |
| Zm00001d031269_P002 | Maize | nucleus | 31.11 | 4.07 |
| Zm00001d029380_P002 | Maize | cytosol, nucleus, plasma membrane | 33.33 | 3.47 |
Protein Annotations
| EnsemblPlants:Zm00001d029629_P001 | EnsemblPlants:Zm00001d029629_T001 | EnsemblPlantsGene:Zm00001d029629 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF11 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:ONL99125.1 |
| SUPFAM:SSF54928 | UniParc:UPI00084460CA | UniProt:A0A1D6K6D2 | MapMan:35.2 | : | : |
Description
Serine/arginine-rich SC35-like splicing factor SCL33
Coordinates
chr1:-:80604100..80605574
Molecular Weight (calculated)
5218.3 Da
IEP (calculated)
7.536
GRAVY (calculated)
-0.478
Length
45 amino acids
Sequence
(BLAST)
(BLAST)
1: MTAREPRGFG FIQYFDPEDA SDAKYHMDGK MLLGREIVVV LQRKT
001: MRGRSYTPSP PRGYGRRGRS PSPRGRYGGR SRDLPTSLLV RNLRHDCRQE DLRKSFEQFG PVKDIYLPRD YYTGSHLCTD TCKASRDPRG FGFVQFMDPA
101: DAADAKHHMD GYLLLGRELT VVFAEENRKK PTEMRARERG GGRFRDRRRT PPRYYSRSRS PPPRRGRSRS RSGDYYSPPP RRHHPRSISP REERYDGRRS
201: YSRSPASDGS RGRSLTPVRG KSRSLSPSPR RSISRSPRRS RSPSPKRNRS VSPRRSISRS PRRSRSPRRS RRSYTPEPAR SRSQSPHGGQ YDEDRSPSQ
101: DAADAKHHMD GYLLLGRELT VVFAEENRKK PTEMRARERG GGRFRDRRRT PPRYYSRSRS PPPRRGRSRS RSGDYYSPPP RRHHPRSISP REERYDGRRS
201: YSRSPASDGS RGRSLTPVRG KSRSLSPSPR RSISRSPRRS RSPSPKRNRS VSPRRSISRS PRRSRSPRRS RRSYTPEPAR SRSQSPHGGQ YDEDRSPSQ
Arabidopsis Description
SR33SC35-like splicing factor 33 [Source:TAIR;Acc:AT1G55310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.