Factsheet for GSMUA_Achr4P13560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09660_001
GSMUA_Achr1P17340_001
GSMUA_Achr4P13560_001
GSMUA_Achr5P27460_001
GSMUA_Achr5P27470_001
GSMUA_Achr6P15450_001
GSMUA_Achr8P00210_001
GSMUA_Achr8P00220_001
GSMUA_Achr8P09080_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P34280_001
GSMUA_Achr9P21660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13570.1	GSMUA_Achr11P...	AT1G02840.1	18674533
AT3G13570.1	GSMUA_Achr8P10150_001	AT1G02840.1	18674533
AT3G13570.1	GSMUA_Achr11P...	AT1G09140.1	18674533
AT3G13570.1	GSMUA_Achr8P10150_001	AT1G09140.1	18674533
AT3G13570.1	GSMUA_Achr1P09660_001	AT1G23860.1	18674533
AT3G13570.1	GSMUA_AchrUn_...	AT1G23860.1	18674533
AT3G13570.1	GSMUA_Achr10P...	AT2G37340.1	18674533
AT3G13570.1	GSMUA_Achr6P15450_001	AT2G37340.1	18674533
AT3G13570.1	GSMUA_Achr8P09080_001	AT2G43370.1	15987817
AT3G13570.1	GSMUA_Achr4P13560_001	AT3G13570.1	18674533
AT3G13570.1	GSMUA_Achr9P21660_001	AT3G13570.1	18674533
AT3G13570.1	GSMUA_Achr1P17340_001	AT3G55460.1	18674533
AT3G13570.1	GSMUA_Achr8P34280_001	AT3G55460.1	18674533
AT3G13570.1	GSMUA_Achr11P...	AT3G61860.1	18674533
AT3G13570.1	GSMUA_Achr5P27460_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr5P27470_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr8P00210_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr8P00220_001	AT5G18810.1	18674533
AT3G13570.1	GSMUA_Achr10P...	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0374575-01	Rice	nucleus	67.74	67.74
EER92211	Sorghum	nucleus	66.36	67.61
EER97602	Sorghum	nucleus	63.13	65.55
Zm00001d022243_P002	Maize	nucleus	63.13	65.55
Zm00001d047401_P001	Maize	nucleus	64.98	65.28
Zm00001d029629_P001	Maize	nucleus	13.36	64.44
Bra034794.1-P	Field mustard	nucleus	61.29	64.25
VIT_06s0004g00710.t01	Wine grape	nucleus	72.35	64.08
CDY08473	Canola	nucleus	60.37	63.9
KRH16958	Soybean	nucleus	73.27	63.86
Os07t0633200-02	Rice	nucleus	62.67	63.85
GSMUA_Achr9P21660_001	Banana	nucleus	71.89	63.67
KRH72576	Soybean	nucleus	73.73	63.24
TraesCS2A01G155100.1	Wheat	nucleus	56.68	60.0
TraesCS2D01G160400.1	Wheat	nucleus	56.68	60.0
Zm00001d019443_P002	Maize	nucleus	29.03	59.43
TraesCS2B01G180200.1	Wheat	nucleus	56.68	59.42
HORVU2Hr1G028210.9	Barley	nucleus	56.22	58.65
PGSC0003DMT400081835	Potato	nucleus	66.36	58.06
Solyc01g005820.2.1	Tomato	nucleus	67.28	57.94
AT3G13570.1	Thale cress	nucleus	69.12	57.25
Zm00001d004470_P001	Maize	nucleus	28.57	55.86
CDY01078	Canola	nucleus	60.83	55.46
Zm00001d016504_P001	Maize	nucleus	18.89	54.67
Zm00001d005285_P001	Maize	nucleus	35.48	53.85
AT1G55310.3	Thale cress	nucleus	71.89	52.17
PGSC0003DMT400010908	Potato	nucleus	66.36	51.43
KRH38014	Soybean	endoplasmic reticulum, nucleus	64.98	49.3
Zm00001d029305_P001	Maize	nucleus	36.87	48.78
Zm00001d010881_P001	Maize	nucleus	39.17	46.45
GSMUA_Achr5P27460_001	Banana	nucleus	19.35	44.68
GSMUA_Achr8P00210_001	Banana	mitochondrion, nucleus	19.82	40.19
GSMUA_Achr8P34280_001	Banana	nucleus	47.93	38.66
GSMUA_Achr1P17340_001	Banana	nucleus	46.54	37.69
Zm00001d005739_P004	Maize	cytosol	18.89	37.27
Zm00001d015189_P001	Maize	nucleus	29.95	36.93
GSMUA_Achr5P27470_001	Banana	nucleus	19.82	35.83
Zm00001d043759_P001	Maize	cytosol	24.42	34.42
Zm00001d012570_P002	Maize	extracellular	25.81	34.36
GSMUA_Achr10P...	Banana	nucleus	31.34	28.69
Zm00001d010176_P001	Maize	cytosol	14.75	28.07
Zm00001d013841_P001	Maize	endoplasmic reticulum, extracellular, vacuole	27.65	27.78
GSMUA_Achr2P00600_001	Banana	nucleus	30.88	27.13
Zm00001d004722_P001	Maize	cytosol	12.9	26.42
GSMUA_Achr5P05380_001	Banana	nucleus	30.41	25.88
GSMUA_Achr8P00220_001	Banana	extracellular	24.88	24.43

Protein Annotations

EnsemblPlants:GSMUA_Achr4P13560_001	EnsemblPlants:GSMUA_Achr4T13560_001	EnsemblPlantsGene:GSMUA_Achr4G13560_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR23147	PANTHER:PTHR23147:SF41	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296A263	UniProt:M0SNM1	MapMan:16.4.6.2	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G13560_001]

Coordinates

chr4:+:10117880..10121639

Molecular Weight (calculated)

25219.5 Da

IEP (calculated)

11.969

GRAVY (calculated)

-1.548

Length

217 amino acids

Sequence
(BLAST)

001: MRGRSYSCSP SPPRGYERRG RSPSPRGRYG GRGRDLPTSL LVRNLRRDCR PEDLRRQFGQ FGPLKDIYLP RDYYTGEPRG FGFVQYVDPA DAADAKYHMD
101: RQVLLGRELT VVFAEENRKK PLEMRARQRR GRDHRRSPRH PRSPRYSRSR SRSPQCSRPA RGRSRSQSHS YDSPSPNHRH HSRSVSPRNG KPNRERSYSH
201: SPPGSRSRSR SPGDLPE

Best Arabidopsis Sequence Match ( AT3G13570.1 )
(BLAST)

001: MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG
101: YLLLGRELTV VFAEENRKKP TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ DRRYEKERSY SRSPPHNGSR
201: VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP RQSRSPTPVP RGAQNGDRSP SQ

Arabidopsis Description

SCL30ASerine/arginine-rich SC35-like splicing factor SCL30A [Source:UniProtKB/Swiss-Prot;Acc:Q9LHP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.