Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32406 | Sorghum | cytosol | 61.27 | 81.85 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 59.83 | 81.18 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 59.54 | 80.78 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 59.54 | 80.78 |
| Bra018581.1-P | Field mustard | cytosol | 49.71 | 74.14 |
| Zm00001d040672_P013 | Maize | nucleus | 62.14 | 73.38 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 73.12 | 72.29 |
| CDY66028 | Canola | cytosol | 52.31 | 71.54 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 59.54 | 71.53 |
| Solyc01g099810.2.1 | Tomato | nucleus | 54.34 | 71.21 |
| GSMUA_Achr1P06160_001 | Banana | nucleus | 51.16 | 71.08 |
| CDX91319 | Canola | nucleus | 59.83 | 69.23 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 60.98 | 68.51 |
| CDY22050 | Canola | nucleus | 60.69 | 67.96 |
| AT1G09140.1 | Thale cress | cytosol | 52.6 | 67.91 |
| Bra036267.1-P | Field mustard | nucleus | 60.69 | 67.31 |
| PGSC0003DMT400029666 | Potato | nucleus | 61.27 | 67.3 |
| CDX97264 | Canola | nucleus | 59.25 | 67.21 |
| CDY50385 | Canola | nucleus | 59.83 | 67.21 |
| KRG96443 | Soybean | nucleus | 60.12 | 66.45 |
| KRG92904 | Soybean | nucleus | 52.89 | 66.3 |
| Bra018550.1-P | Field mustard | nucleus | 49.71 | 65.9 |
| AT1G02840.1 | Thale cress | nucleus | 56.36 | 64.36 |
| KRH68188 | Soybean | nucleus | 55.2 | 63.88 |
| AT4G02430.4 | Thale cress | nucleus | 53.76 | 63.7 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 53.47 | 63.36 |
| Solyc09g075090.1.1 | Tomato | nucleus | 55.49 | 62.95 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 60.12 | 61.9 |
| CDX95008 | Canola | nucleus | 49.42 | 53.94 |
| PGSC0003DMT400063701 | Potato | nucleus | 49.71 | 52.12 |
| Solyc06g009060.2.1 | Tomato | nucleus | 37.86 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 19.08 | 38.15 |
| Os01t0316600-01 | Rice | plastid | 13.01 | 36.29 |
| GSMUA_Achr10P... | Banana | nucleus | 30.92 | 32.92 |
| GSMUA_Achr5P29210_001 | Banana | nucleus | 28.32 | 32.24 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 30.35 | 31.16 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P15830_001 | EnsemblPlants:GSMUA_Achr11T15830_001 | EnsemblPlantsGene:GSMUA_Achr11G15830_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002961AC6 | UniProt:M0RSL3 | MapMan:16.4.6.1 | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G15830_001]
Coordinates
chr11:-:17516875..17527292
Molecular Weight (calculated)
38866.6 Da
IEP (calculated)
11.171
GRAVY (calculated)
-0.893
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRYSRTIY VGNLPGDIRE REVEDLFNKY GPIIDIDLKI PPRPPGYAFI EFEDPRDADD AIRGRDGYNF DGHRLRVELA HGGRGQSSSF DRHSSYSSGG
101: RRGGVSRRSE YRVMVTGLPS SASWQDLKDH MRRAGDVCFS EVFRDGGGTI GIVDYTNYDD MKYAIRKLDD SEFRNAFSRA YIRVKEYDSK RSLSRSRSRS
201: RSYSRSPTPP RSRSRSRSKS PRAKPSRHSL SRSRSRSASS HSRSASKGRS LSRFGLKRGS LDCMLGSELD MVAMLATFLG EVLPFLQHFP STISCIQGPG
301: YSFPGSQSRS RSPVTSPLRG SKSPSKPSPN RSRSLSRSRS PMAKSE
101: RRGGVSRRSE YRVMVTGLPS SASWQDLKDH MRRAGDVCFS EVFRDGGGTI GIVDYTNYDD MKYAIRKLDD SEFRNAFSRA YIRVKEYDSK RSLSRSRSRS
201: RSYSRSPTPP RSRSRSRSKS PRAKPSRHSL SRSRSRSASS HSRSASKGRS LSRFGLKRGS LDCMLGSELD MVAMLATFLG EVLPFLQHFP STISCIQGPG
301: YSFPGSQSRS RSPVTSPLRG SKSPSKPSPN RSRSLSRSRS PMAKSE
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.