Factsheet for PGSC0003DMT400029666

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400016115
PGSC0003DMT400032709
PGSC0003DMT400038558
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400069100
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400060435	AT2G37340.1	18674533
AT1G02840.1	PGSC0003DMT400061471	AT2G37340.1	18674533
AT1G02840.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT1G02840.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT1G02840.1	PGSC0003DMT400081835	AT3G13570.1	18674533
AT1G02840.1	PGSC0003DMT400038558	AT3G50670.1	18674533
AT1G02840.1	PGSC0003DMT400016115	AT5G18810.1	18674533
AT1G02840.1	PGSC0003DMT400032709	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075090.1.1	Tomato	nucleus	80.32	82.95
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	66.35	71.58
EER94870	Sorghum	mitochondrion, nucleus	64.76	71.33
VIT_07s0005g00320.t01	Wine grape	nucleus	69.21	70.78
KXG32406	Sorghum	cytosol	58.1	70.66
Os03t0344100-02	Rice	mitochondrion, nucleus	64.13	70.63
KRG96443	Soybean	nucleus	69.52	69.97
Zm00001d047498_P003	Maize	nucleus	63.17	69.82
Os07t0673500-01	Rice	nucleus	65.08	69.26
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	62.86	69.23
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	61.9	68.66
CDY22050	Canola	nucleus	67.3	68.61
CDX97264	Canola	nucleus	66.35	68.52
TraesCS2D01G112200.1	Wheat	nucleus	61.59	68.31
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	63.49	68.26
TraesCS3B01G293100.1	Wheat	cytosol	54.92	67.84
TraesCS3D01G260200.1	Wheat	cytosol	54.92	67.84
AT1G02840.1	Thale cress	nucleus	65.08	67.66
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	62.86	67.58
CDY50385	Canola	nucleus	66.03	67.53
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	63.17	67.46
TraesCS3A01G260000.1	Wheat	cytosol	54.6	67.45
Bra036267.1-P	Field mustard	nucleus	66.67	67.31
CDX91319	Canola	nucleus	63.49	66.89
TraesCS4A01G157700.1	Wheat	mitochondrion	62.54	66.55
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	53.33	66.4
Bra018550.1-P	Field mustard	nucleus	54.92	66.28
KRH68188	Soybean	nucleus	62.86	66.22
KXG21829	Sorghum	nucleus	58.1	65.83
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	56.19	65.8
AT4G02430.4	Thale cress	nucleus	60.95	65.75
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	52.7	65.35
GSMUA_Achr8P10150_001	Banana	nucleus	71.43	64.29
Zm00001d040672_P013	Maize	nucleus	58.73	63.14
GSMUA_Achr11P...	Banana	nucleus	67.3	61.27
Os05t0364600-01	Rice	nucleus	60.95	60.19
TraesCS2B01G130400.1	Wheat	nucleus	62.22	56.65
Zm00001d041673_P001	Maize	cytosol	20.32	56.14
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	54.29	50.89
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	54.6	49.71
PGSC0003DMT400063701	Potato	nucleus	50.16	47.88
PGSC0003DMT400008347	Potato	cytosol	47.94	47.04
Os01t0316600-01	Rice	plastid	13.02	33.06
PGSC0003DMT400060435	Potato	nucleus	30.79	32.33
PGSC0003DMT400061471	Potato	nucleus	28.57	28.57
Zm00001d009821_P001	Maize	plastid	26.98	26.73

Protein Annotations

EntrezGene:102592958	MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1AT81	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400011402	PGSC:PGSC0003DMG400011402	EnsemblPlants:PGSC0003DMT400029666	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF7
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029495C7	RefSeq:XP_006359376.1
SEG:seg	:	:	:	:	:

Description

Pre-mRNA-splicing factor SF2 [Source:PGSC_GENE;Acc:PGSC0003DMG400011402]

Coordinates

chr9:-:52628894..52636239

Molecular Weight (calculated)

35109.9 Da

IEP (calculated)

12.094

GRAVY (calculated)

-1.261

Length

315 amino acids

Sequence
(BLAST)

001: MSRSSRTLYV GNLPGDVRER EVEDLFHKYG PIAHIELKIP PRPPGYAFVE FEEARDAEDA IRGRDGYDFD GHRLRVELAH GGRGNSSSND RYGGGGGGGG
101: GGGRGQRGGG VSRRSDFRVL VTGLPHSASW QDLKDHMRRA GDVCFSQVFR DGSGTTGIID YTNYDDMKYA IKKLDDSEFR NAFSRATIRV KEYDRSRSRS
201: RSRSRSRSYS KGKSVSRSRS RSRSRSRSKS KSKSPKVKSS KRSRSRSRSV SSRSRSGSKG RPVSRSPSRS RSPAPARSKP LSKSPKRRTP SSSPKRRTPS
301: RSPSRSRSRS RSLSR

Best Arabidopsis Sequence Match ( AT1G02840.1 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.