Factsheet for PGSC0003DMT400008347

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94214	Canola	cytosol	49.22	79.0
Solyc03g082380.2.1	Tomato	nucleus	65.42	75.0
VIT_16s0098g01020.t01	Wine grape	nucleus	57.01	73.2
KRH53616	Soybean	nucleus	57.63	70.34
KRH64312	Soybean	nucleus	57.32	68.91
CDX86974	Canola	nucleus	55.76	66.54
CDY00202	Canola	nucleus	55.76	65.09
Bra017986.1-P	Field mustard	nucleus	57.32	64.79
GSMUA_Achr1P06160_001	Banana	nucleus	49.84	64.26
Bra029955.1-P	Field mustard	nucleus	52.02	64.23
CDY08133	Canola	cytosol	57.63	64.01
Bra019595.1-P	Field mustard	nucleus	56.7	63.86
CDY05936	Canola	nucleus	57.63	62.71
CDX68538	Canola	nucleus	53.58	60.99
AT3G49430.4	Thale cress	nucleus	56.7	60.67
PGSC0003DMT400037966	Potato	cytosol, extracellular, nucleus	43.61	47.95
PGSC0003DMT400029666	Potato	nucleus	47.04	47.94
PGSC0003DMT400063701	Potato	nucleus	42.68	41.52
CDY61855	Canola	nucleus	53.89	29.27
PGSC0003DMT400060435	Potato	nucleus	21.81	23.33
PGSC0003DMT400061471	Potato	nucleus	20.56	20.95

Protein Annotations

Gene3D:1.10.10.1410	EntrezGene:102577891	MapMan:16.4.6.1	MapMan:17.1.2.1.46	Gene3D:3.30.70.330	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0006414	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR038716	UniProt:M0ZUF8	HAMAP:MF_01478	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:P1/P2_N_sf	PFAM:PF00076
PFAM:PF00428	EnsemblPlantsGene:PGSC0003DMG400003218	PGSC:PGSC0003DMG400003218	EnsemblPlants:PGSC0003DMT400008347	PFscan:PS50102	PANTHER:PTHR43933
PANTHER:PTHR43933:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:Ribosomal_L12	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI0002964DAD	SEG:seg	:	:	:	:

Description

Pre-mRNA splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003218]

Coordinates

chr3:-:47531363..47537272

Molecular Weight (calculated)

35226.3 Da

IEP (calculated)

6.535

GRAVY (calculated)

-0.523

Length

321 amino acids

Sequence
(BLAST)

001: MSGRFSRSIY VGNLPADIKE LEVEDLFYKY GRILDIELKI PPRPPCYCFV EFESSRDAED AIRGRDGYNF DGCRLRVELA HGGRGPSSSS DRRGSYGSSG
101: GGGGGGGRHG ISRHSDYRVI IRGLPSSASW QDLKDHMRKA GDVCFAEVSR DSEGTFGLVD YTNYEDMKYA IRKLDDTEFR NPWTRTYIRV REYKGSPSRS
201: RSRSRSRSRT PRKIGELGCT YAALLLFDDG IPITAEKIAT VVKAANISVE SYWPSLFAKL FEKRDIEDLI LTVGTGGGPA VAVTAAPVGG GGAAAAAPAA
301: EEKKEEMKED SDEDLGLSLF D

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.