Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86974 | Canola | nucleus | 83.33 | 92.94 |
| CDY00202 | Canola | nucleus | 85.0 | 92.73 |
| Bra019595.1-P | Field mustard | nucleus | 87.67 | 92.28 |
| Bra017986.1-P | Field mustard | nucleus | 87.0 | 91.9 |
| CDY08133 | Canola | cytosol | 86.0 | 89.27 |
| CDX94214 | Canola | cytosol | 59.33 | 89.0 |
| CDY05936 | Canola | nucleus | 86.67 | 88.14 |
| CDX68538 | Canola | nucleus | 81.67 | 86.88 |
| Bra029955.1-P | Field mustard | nucleus | 73.0 | 84.23 |
| KRH64312 | Soybean | nucleus | 71.33 | 80.15 |
| KRH53616 | Soybean | nucleus | 70.0 | 79.85 |
| VIT_16s0098g01020.t01 | Wine grape | nucleus | 65.33 | 78.4 |
| Solyc03g082380.2.1 | Tomato | nucleus | 68.0 | 72.86 |
| GSMUA_Achr1P06160_001 | Banana | nucleus | 60.33 | 72.69 |
| AT1G09140.1 | Thale cress | cytosol | 55.0 | 61.57 |
| PGSC0003DMT400008347 | Potato | cytosol | 60.67 | 56.7 |
| AT1G02840.1 | Thale cress | nucleus | 57.0 | 56.44 |
| AT4G02430.4 | Thale cress | nucleus | 54.0 | 55.48 |
| CDY61855 | Canola | nucleus | 83.67 | 42.47 |
| AT2G37340.1 | Thale cress | nucleus | 28.0 | 28.97 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 26.67 | 28.17 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | EntrezGene:824105 | UniProt:A2RVS6 | ProteinID:AAG52185.1 | ProteinID:AEE78541.1 |
| ProteinID:AEE78542.1 | ProteinID:AEE78543.1 | ProteinID:ANM63803.1 | ProteinID:ANM63804.1 | ProteinID:ANM63805.1 | ProteinID:ANM63806.1 |
| ArrayExpress:AT3G49430 | EnsemblPlantsGene:AT3G49430 | RefSeq:AT3G49430 | TAIR:AT3G49430 | RefSeq:AT3G49430-TAIR-G | EnsemblPlants:AT3G49430.4 |
| Unigene:At.35607 | EMBL:BT030067 | ProteinID:CAB62448.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005681 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016607 |
| InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001078264.1 | RefSeq:NP_001190041.1 | RefSeq:NP_001325874.1 | RefSeq:NP_001325875.1 |
| RefSeq:NP_001325876.1 | RefSeq:NP_001325877.1 | RefSeq:NP_190512.3 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | Symbol:SRp34a |
| SUPFAM:SSF54928 | UniParc:UPI000034EFDA | SEG:seg | : | : | : |
Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
Coordinates
chr3:+:18331509..18335154
Molecular Weight (calculated)
33601.3 Da
IEP (calculated)
11.387
GRAVY (calculated)
-1.131
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.