Factsheet for AT2G37340.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79732	Canola	nucleus	91.72	90.78
Bra023114.1-P	Field mustard	nucleus	91.03	83.54
CDY46773	Canola	nucleus	90.34	82.91
AT3G53500.2	Thale cress	mitochondrion, nucleus	79.31	80.99
KRH67593	Soybean	endoplasmic reticulum	66.9	67.6
KRG95876	Soybean	nucleus	66.55	67.25
PGSC0003DMT400060435	Potato	nucleus	65.52	63.33
KRH67596	Soybean	nucleus	63.79	61.87
KRG95883	Soybean	nucleus	62.41	60.94
KXG21152	Sorghum	nucleus	61.72	57.37
EES00292	Sorghum	nucleus	58.28	57.09
Solyc05g054920.2.1	Tomato	nucleus	65.52	56.38
GSMUA_Achr10P...	Banana	nucleus	63.1	56.31
Solyc09g005980.2.1	Tomato	nucleus	61.03	56.19
VIT_08s0040g02860.t01	Wine grape	nucleus	51.03	55.64
PGSC0003DMT400061471	Potato	nucleus	60.34	55.56
Os05t0120100-01	Rice	mitochondrion, nucleus	61.03	54.8
GSMUA_Achr6P15450_001	Banana	nucleus	62.07	53.41
Os01t0155600-01	Rice	nucleus	59.66	53.4
Os03t0285900-01	Rice	nucleus	60.69	53.33
TraesCS1B01G065900.2	Wheat	nucleus	62.07	52.79
TraesCS1A01G108000.2	Wheat	nucleus	50.34	52.52
Zm00001d011004_P008	Maize	nucleus	61.03	52.37
TraesCS1D01G051900.1	Wheat	nucleus	61.72	52.34
KXG21387	Sorghum	nucleus	47.59	52.08
TraesCS1A01G049700.1	Wheat	nucleus	61.38	52.05
TraesCS1D01G111000.2	Wheat	nucleus	51.38	51.92
EES18924	Sorghum	nucleus	60.69	51.61
Zm00001d011005_P005	Maize	nucleus	62.76	51.56
TraesCS1B01G130200.3	Wheat	nucleus	50.69	51.22
TraesCS3B01G151100.1	Wheat	nucleus	56.55	50.77
TraesCS3D01G134500.1	Wheat	nucleus	56.21	50.31
HORVU1Hr1G024060.21	Barley	nucleus	51.72	50.17
KRH42195	Soybean	endoplasmic reticulum	47.24	49.82
TraesCS3A01G308000.1	Wheat	nucleus	56.55	49.25
HORVU1Hr1G009950.7	Barley	nucleus, plastid	61.38	48.37
Zm00001d037543_P001	Maize	nucleus	30.0	48.33
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	58.97	46.09
OQU77498	Sorghum	nucleus	17.24	45.05
KRH58317	Soybean	nucleus	31.72	42.01
Os05t0162600-01	Rice	nucleus	45.17	38.76
Zm00001d035551_P007	Maize	nucleus	45.52	33.67
AT1G09140.1	Thale cress	cytosol	30.0	32.46
AT1G02840.1	Thale cress	nucleus	33.45	32.01
AT4G02430.4	Thale cress	nucleus	28.62	28.42
AT3G49430.4	Thale cress	nucleus	28.97	28.0
KXG21391	Sorghum	nucleus	37.59	27.25

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:818311	UniProt:A0A178VWS1	ProteinID:AAC98054.1
ProteinID:AEC09385.1	ProteinID:AEC09386.1	ProteinID:AEC09387.1	EMBL:AJ293801	EMBL:AK176551	EMBL:AK176666
ProteinID:ANM63217.1	ProteinID:ANM63218.1	ProteinID:ANM63219.1	ArrayExpress:AT2G37340	EnsemblPlantsGene:AT2G37340	RefSeq:AT2G37340
TAIR:AT2G37340	RefSeq:AT2G37340-TAIR-G	EnsemblPlants:AT2G37340.1	TAIR:AT2G37340.1	EMBL:AY072315	EMBL:AY114563
Unigene:At.48558	EMBL:BX842463	EMBL:BX842467	GO:GO:0000245	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005681	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0008380	GO:GO:0009987	GO:GO:0016043
GO:GO:0016607	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	RefSeq:NP_001325321.1
RefSeq:NP_001325322.1	RefSeq:NP_001325323.1	RefSeq:NP_850280.1	RefSeq:NP_973619.1	RefSeq:NP_973620.1	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:OAP10800.1	PFAM:PF00076	PFAM:PF00098	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020003
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	UniProt:Q8VYA5	InterPro:RBD_domain_sf
InterPro:RRM_dom	Symbol:RSZ33	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI00000A7F80	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]

Coordinates

chr2:-:15670147..15672700

Molecular Weight (calculated)

32894.8 Da

IEP (calculated)

10.645

GRAVY (calculated)

-1.420

Length

290 amino acids

Sequence
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.