Factsheet for Solyc05g054920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005820.2.1
Solyc01g080660.2.1
Solyc01g105140.2.1
Solyc02g085420.2.1
Solyc06g009060.2.1
Solyc07g066420.2.1
Solyc08g069120.2.1
Solyc09g075090.1.1
Solyc09g098390.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	Solyc06g009060.2.1	AT1G02840.1	18674533
AT2G37340.1	Solyc09g075090.1.1	AT1G02840.1	18674533
AT2G37340.1	Solyc07g066420.2.1	AT1G53720.1	16497658
AT2G37340.1	Solyc09g098390.2.1	AT2G43370.1	15987817
AT2G37340.1	Solyc01g005820.2.1	AT3G13570.1	18674533
AT2G37340.1	Solyc02g085420.2.1	AT3G50670.1	18674533
AT2G37340.1	Solyc08g069120.2.1	AT4G31580.1	18674533
AT2G37340.1	Solyc01g080660.2.1	AT5G18810.1	18674533
AT2G37340.1	Solyc01g105140.2.1	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060435	Potato	nucleus	87.54	98.33
CDX78183	Canola	nucleus	56.08	66.78
KXG21152	Sorghum	nucleus	61.42	66.35
CDX79732	Canola	nucleus	57.57	66.21
CDX73550	Canola	nucleus	55.79	66.2
CDX80835	Canola	nucleus	51.93	66.04
AT3G53500.2	Thale cress	mitochondrion, nucleus	55.49	65.85
AT2G37340.1	Thale cress	nucleus	56.38	65.52
CDY11223	Canola	nucleus	50.74	65.02
EES00292	Sorghum	nucleus	56.68	64.53
Bra007004.1-P	Field mustard	nucleus	56.08	63.64
CDY07586	Canola	mitochondrion, nucleus	54.3	63.54
Bra005756.1-P	Field mustard	nucleus	43.32	63.48
Bra003139.1-P	Field mustard	mitochondrion, nucleus	54.3	62.89
CDY52755	Canola	mitochondrion, nucleus	54.3	62.89
Os05t0120100-01	Rice	mitochondrion, nucleus	59.94	62.54
Bra023114.1-P	Field mustard	nucleus	57.86	61.71
GSMUA_Achr10P...	Banana	nucleus	59.35	61.54
Os01t0155600-01	Rice	nucleus	59.05	61.42
CDY46773	Canola	nucleus	57.57	61.39
Os03t0285900-01	Rice	nucleus	59.05	60.3
GSMUA_Achr6P15450_001	Banana	nucleus	60.24	60.24
Solyc09g005980.2.1	Tomato	nucleus	56.08	60.0
TraesCS3B01G151100.1	Wheat	nucleus	56.68	59.13
TraesCS3D01G134500.1	Wheat	nucleus	56.68	58.95
TraesCS1B01G065900.2	Wheat	nucleus	59.64	58.94
EES18924	Sorghum	nucleus	59.35	58.65
Zm00001d011004_P008	Maize	nucleus	58.75	58.58
TraesCS1D01G051900.1	Wheat	nucleus	59.35	58.48
TraesCS1A01G049700.1	Wheat	nucleus	59.35	58.48
TraesCS3A01G308000.1	Wheat	nucleus	56.68	57.36
Zm00001d011005_P005	Maize	nucleus	59.94	57.22
TraesCS1A01G108000.2	Wheat	nucleus	45.4	55.04
HORVU1Hr1G009950.7	Barley	nucleus, plastid	59.94	54.89
TraesCS1D01G111000.2	Wheat	nucleus	46.59	54.7
HORVU1Hr1G024060.21	Barley	nucleus	48.37	54.52
TraesCS1B01G130200.3	Wheat	nucleus	45.99	54.01
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	58.46	53.1
KXG21387	Sorghum	nucleus	41.25	52.45
Zm00001d037543_P001	Maize	nucleus	26.71	50.0
OQU77498	Sorghum	nucleus	15.13	45.95
Os05t0162600-01	Rice	nucleus	42.73	42.6
Zm00001d035551_P007	Maize	nucleus	41.25	35.46
Solyc01g099810.2.1	Tomato	nucleus	24.93	31.82
Solyc03g082380.2.1	Tomato	nucleus	24.93	30.0
KXG21391	Sorghum	nucleus	34.42	29.0
Solyc09g075090.1.1	Tomato	nucleus	25.82	28.52
Solyc06g009060.2.1	Tomato	nucleus	17.8	22.9

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:K4C2G9
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147
PANTHER:PTHR23147:SF39	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928
SUPFAM:SSF57756	EnsemblPlantsGene:Solyc05g054920.2	EnsemblPlants:Solyc05g054920.2.1	UniParc:UPI0002766E96	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:64716324..64720576

Molecular Weight (calculated)

38465.3 Da

IEP (calculated)

10.585

GRAVY (calculated)

-1.443

Length

337 amino acids

Sequence
(BLAST)

001: MENRETTVLY SFERIGSRVL TFLCLFQFSE KMPRYDDRYG GTRLYVGHLS SRTRSRDLED VFSRYGRVRD VDMKRDYAFV EFSDPRDADD ARYGLNGRDV
101: DGSRVIVEFA KGVPRGPGGS REFGGRGPPP GTGRCFNCGI DGHWARDCKA GDWKNKCYRC GDRGHIERNC QNSPKKLKRD RSYSRSPSPR RGRSRSRSRS
201: YSRGRSYSRS RSPVKRDRSI EREEKRSRSP RHHRSSPPPS KGRKHSLSPD ERSPVERGTP SPRDDRATNG SDRSRSPKDD VRMDERGDIS PVEENGRSRS
301: NSPIHREDRS PVEDGSPTGD YENHGSPRGS PRGSESP

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.