Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G111000.2 | Wheat | nucleus | 99.64 | 96.52 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 97.84 | 94.77 |
| HORVU1Hr1G024060.21 | Barley | nucleus | 92.81 | 86.29 |
| KRG95876 | Soybean | nucleus | 55.4 | 53.66 |
| KRH67593 | Soybean | endoplasmic reticulum | 55.04 | 53.31 |
| OQU77498 | Sorghum | nucleus | 21.22 | 53.15 |
| CDY11223 | Canola | nucleus | 50.0 | 52.85 |
| KXG21387 | Sorghum | nucleus | 50.36 | 52.83 |
| CDX80835 | Canola | nucleus | 50.36 | 52.83 |
| CDX78183 | Canola | nucleus | 52.88 | 51.94 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 52.88 | 51.76 |
| CDX79732 | Canola | nucleus | 54.32 | 51.54 |
| KRG95883 | Soybean | nucleus | 55.04 | 51.52 |
| CDX73550 | Canola | nucleus | 52.52 | 51.41 |
| PGSC0003DMT400060435 | Potato | nucleus | 55.4 | 51.33 |
| KRH67596 | Soybean | nucleus | 55.04 | 51.17 |
| GSMUA_Achr10P... | Banana | nucleus | 59.71 | 51.08 |
| CDY07586 | Canola | mitochondrion, nucleus | 52.52 | 50.69 |
| AT2G37340.1 | Thale cress | nucleus | 52.52 | 50.34 |
| CDY52755 | Canola | mitochondrion, nucleus | 52.52 | 50.17 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 52.52 | 50.17 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 60.79 | 50.15 |
| Bra005756.1-P | Field mustard | nucleus | 41.37 | 50.0 |
| Bra007004.1-P | Field mustard | nucleus | 52.88 | 49.49 |
| Bra023114.1-P | Field mustard | nucleus | 55.04 | 48.42 |
| Zm00001d037543_P001 | Maize | nucleus | 31.3 | 48.33 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 46.04 | 48.12 |
| CDY46773 | Canola | nucleus | 54.68 | 48.1 |
| Solyc09g005980.2.1 | Tomato | nucleus | 54.32 | 47.94 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 58.63 | 47.66 |
| PGSC0003DMT400061471 | Potato | nucleus | 53.96 | 47.62 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 54.68 | 45.65 |
| Solyc05g054920.2.1 | Tomato | nucleus | 55.04 | 45.4 |
| KRH42195 | Soybean | endoplasmic reticulum | 37.77 | 38.18 |
| Os05t0162600-01 | Rice | nucleus | 45.32 | 37.28 |
| KRH58317 | Soybean | nucleus | 27.7 | 35.16 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 27.34 | 30.04 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 25.18 | 27.45 |
| KXG21391 | Sorghum | nucleus | 39.21 | 27.25 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 27.34 | 25.68 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 24.1 | 23.59 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF39 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 |
| EnsemblPlantsGene:TraesCS1A01G108000 | EnsemblPlants:TraesCS1A01G108000.2 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr1A:+:107102215..107106627
Molecular Weight (calculated)
32406.0 Da
IEP (calculated)
9.560
GRAVY (calculated)
-1.488
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRYDDRYDR YDDRYDRYDD RYDRYNDRYD RYDRYGGNTK LYVGHLSTHT RTKDVEYLFG RYGRIRCVEL KYDYGFVEFS DPRDADDARY ELDGQEIDGS
101: RIIVEFARGI PRGPGGSREY LGRGPPPGSG RCFNCGIDGH WARDCNAGDW KNKCYRCGEK GHIEKNCQNS PKNLNFCKYR RGRSYSRSPP PHRERSLSRS
201: YSRSPYPRRD DRAVGHEERR PRSSSYSPRR SASPSGLNRS PAPNGKSHPP REQAEVNGSH NGVRGNSLSP ARDSRPWE
101: RIIVEFARGI PRGPGGSREY LGRGPPPGSG RCFNCGIDGH WARDCNAGDW KNKCYRCGEK GHIEKNCQNS PKNLNFCKYR RGRSYSRSPP PHRERSLSRS
201: YSRSPYPRRD DRAVGHEERR PRSSSYSPRR SASPSGLNRS PAPNGKSHPP REQAEVNGSH NGVRGNSLSP ARDSRPWE
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.