Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 96.96 | 97.95 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 96.62 | 97.61 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 92.57 | 92.88 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 86.49 | 89.51 |
| EER94870 | Sorghum | mitochondrion, nucleus | 84.8 | 87.76 |
| Zm00001d047498_P003 | Maize | nucleus | 83.78 | 87.02 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 78.72 | 82.04 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 62.84 | 72.94 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 59.46 | 69.57 |
| Bra018581.1-P | Field mustard | cytosol | 53.72 | 68.53 |
| CDY66028 | Canola | cytosol | 56.42 | 66.01 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 62.84 | 64.58 |
| Solyc01g099810.2.1 | Tomato | nucleus | 56.76 | 63.64 |
| CDX91319 | Canola | nucleus | 63.85 | 63.21 |
| PGSC0003DMT400029666 | Potato | nucleus | 66.55 | 62.54 |
| AT1G09140.1 | Thale cress | cytosol | 56.42 | 62.31 |
| KRG96443 | Soybean | nucleus | 65.54 | 61.98 |
| KRG92904 | Soybean | nucleus | 57.77 | 61.96 |
| CDX97264 | Canola | nucleus | 63.51 | 61.64 |
| CDY22050 | Canola | nucleus | 64.19 | 61.49 |
| AT1G02840.1 | Thale cress | nucleus | 62.84 | 61.39 |
| Bra036267.1-P | Field mustard | nucleus | 64.19 | 60.9 |
| CDY50385 | Canola | nucleus | 63.18 | 60.71 |
| Bra018550.1-P | Field mustard | nucleus | 53.38 | 60.54 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 62.16 | 59.74 |
| KRH68188 | Soybean | nucleus | 60.14 | 59.53 |
| Solyc09g075090.1.1 | Tomato | nucleus | 60.81 | 59.02 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 57.09 | 57.88 |
| AT4G02430.4 | Thale cress | nucleus | 56.76 | 57.53 |
| CDX95008 | Canola | nucleus | 52.7 | 49.21 |
| PGSC0003DMT400063701 | Potato | nucleus | 52.7 | 47.27 |
| Solyc06g009060.2.1 | Tomato | nucleus | 39.19 | 44.27 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 25.68 | 27.34 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 31.08 | 26.9 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 30.07 | 26.73 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G157700.1 | EnsemblPlantsGene:TraesCS4A01G157700 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF6 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:323047430..323051285
Molecular Weight (calculated)
32272.4 Da
IEP (calculated)
10.731
GRAVY (calculated)
-1.006
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRWSRTIY VGNLPGDIRE REVEDLFYKY GRIVDIDLKV PPRPPGYAFV EFEDPRDAED ACAGRDGYNF DGNRLRVEPA HGGRGSGGPS HDRSSSFGGG
101: GGGGGGGGRR GVSRHTDYRV LVTGLPSSAS WQDLKDHMRR AGDVCFAEVY HEGGGTLGIV DYTNYDDMKY AIKKLDDTEF KNAFSKGYIR VKEYDGKCGR
201: SYSRSRSPSR SRSKSRSPSK SPRARSASRS RSRSRSSRSC SASKGRSPSR SPARSKSPIA SPANGVVASP AASLKKRSPS RSPSRSRSPD VNAKSE
101: GGGGGGGGRR GVSRHTDYRV LVTGLPSSAS WQDLKDHMRR AGDVCFAEVY HEGGGTLGIV DYTNYDDMKY AIKKLDDTEF KNAFSKGYIR VKEYDGKCGR
201: SYSRSRSPSR SRSKSRSPSK SPRARSASRS RSRSRSSRSC SASKGRSPSR SPARSKSPIA SPANGVVASP AASLKKRSPS RSPSRSRSPD VNAKSE
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRYEC
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRYEC
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.