Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22050 | Canola | nucleus | 97.44 | 98.38 |
| CDY50385 | Canola | nucleus | 96.79 | 98.05 |
| Bra018550.1-P | Field mustard | nucleus | 75.0 | 89.66 |
| AT4G02430.4 | Thale cress | nucleus | 77.56 | 82.88 |
| Bra018581.1-P | Field mustard | cytosol | 54.49 | 73.28 |
| KRG96443 | Soybean | nucleus | 70.83 | 70.61 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 56.41 | 69.57 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 56.73 | 69.41 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 56.73 | 69.41 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 56.41 | 69.29 |
| KXG32406 | Sorghum | cytosol | 57.37 | 69.11 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 62.5 | 68.66 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 56.09 | 68.63 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 62.82 | 68.53 |
| EER94870 | Sorghum | mitochondrion, nucleus | 62.82 | 68.53 |
| KRH68188 | Soybean | nucleus | 65.38 | 68.23 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 62.5 | 68.18 |
| Zm00001d047498_P003 | Maize | nucleus | 62.18 | 68.07 |
| TraesCS2D01G112200.1 | Wheat | nucleus | 61.86 | 67.96 |
| PGSC0003DMT400029666 | Potato | nucleus | 67.31 | 66.67 |
| Os07t0673500-01 | Rice | nucleus | 62.18 | 65.54 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 61.54 | 65.53 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 56.41 | 65.43 |
| KXG21829 | Sorghum | nucleus | 58.01 | 65.11 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 61.54 | 65.08 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 60.58 | 64.51 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 60.9 | 64.19 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 62.5 | 63.31 |
| Bra019595.1-P | Field mustard | nucleus | 57.37 | 62.81 |
| Zm00001d040672_P013 | Maize | nucleus | 58.97 | 62.8 |
| Solyc09g075090.1.1 | Tomato | nucleus | 59.94 | 61.31 |
| Bra017986.1-P | Field mustard | nucleus | 55.45 | 60.92 |
| Os05t0364600-01 | Rice | nucleus | 62.18 | 60.81 |
| GSMUA_Achr11P... | Banana | nucleus | 67.31 | 60.69 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 56.73 | 60.62 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 66.99 | 59.71 |
| Bra029955.1-P | Field mustard | nucleus | 49.04 | 58.85 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 62.18 | 56.07 |
| Zm00001d041673_P001 | Maize | cytosol | 20.19 | 55.26 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 56.41 | 52.38 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 54.17 | 48.84 |
| Solyc06g009060.2.1 | Tomato | nucleus | 40.38 | 48.09 |
| Os01t0316600-01 | Rice | plastid | 13.78 | 34.68 |
| Bra029777.1-P | Field mustard | nucleus | 30.77 | 33.45 |
| Bra023114.1-P | Field mustard | nucleus | 33.01 | 32.59 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 30.13 | 32.3 |
| Bra007004.1-P | Field mustard | nucleus | 30.13 | 31.65 |
| Bra005756.1-P | Field mustard | nucleus | 21.47 | 29.13 |
| Zm00001d009821_P001 | Maize | plastid | 25.96 | 25.47 |
Protein Annotations
| EnsemblPlants:Bra036267.1 | EnsemblPlants:Bra036267.1-P | EnsemblPlantsGene:Bra036267 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF7 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002541F8B | UniProt:M4F5B1 | MapMan:16.4.6.1 | : |
Description
AT4G02430 (E=4e-088) | pre-mRNA splicing factor, putative / SR1 protein, putative
Coordinates
chrA09:-:185294..187744
Molecular Weight (calculated)
34774.3 Da
IEP (calculated)
11.696
GRAVY (calculated)
-1.294
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRSSRTIY VGNLPGDIRE REVEDLFSKY GPVVQIDLKI PPRPPGYAFV EFEDPRDADD AIHGRDGYDF DGHCLRVELA HGGRRSSNDA RGSYGGGSRG
101: GGGGRDGGDR GRGPSRRSEY RVVVSGLPSS ASWQDLKDHM RKGGEVCFSQ VFRDGRGTTG IVDYTSYEDM KYAIKKLDDT EFRNAFSRGY VRVREYDSRK
201: DSRSPSRGRS YSKSRSRSRS RSRGRSHSRS LSRSRSRSPK AKSSRRSPAK STSRSPRSRS KSRTPPPRGS RSRSRSPPPP VQKEASKSPS KVSPAKSPMR
301: SRSKSRSRSP SR
101: GGGGRDGGDR GRGPSRRSEY RVVVSGLPSS ASWQDLKDHM RKGGEVCFSQ VFRDGRGTTG IVDYTSYEDM KYAIKKLDDT EFRNAFSRGY VRVREYDSRK
201: DSRSPSRGRS YSKSRSRSRS RSRGRSHSRS LSRSRSRSPK AKSSRRSPAK STSRSPRSRS KSRTPPPRGS RSRSRSPPPP VQKEASKSPS KVSPAKSPMR
301: SRSKSRSRSP SR
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRSRSR SRSPLPSVQK EGSKSPSKPS PAKSPIHTRS
301: PSR
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.