Factsheet for Bra029777.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44717	Canola	nucleus	100.0	97.29
CDY41599	Canola	nucleus	97.21	97.21
Bra005756.1-P	Field mustard	nucleus	57.14	71.3
Bra003139.1-P	Field mustard	mitochondrion, nucleus	62.37	61.51
Bra007004.1-P	Field mustard	nucleus	63.07	60.94
Bra023114.1-P	Field mustard	nucleus	65.16	59.18
Bra018581.1-P	Field mustard	cytosol	27.87	34.48
Bra018550.1-P	Field mustard	nucleus	28.92	31.8
Bra029955.1-P	Field mustard	nucleus	28.57	31.54
Bra036267.1-P	Field mustard	nucleus	33.45	30.77
Bra019595.1-P	Field mustard	nucleus	30.31	30.53
Bra017986.1-P	Field mustard	nucleus	28.92	29.23

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra029777	EnsemblPlants:Bra029777.1	EnsemblPlants:Bra029777.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M4ELV7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0002547B36	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

AT2G37340 (E=2e-059) RSZ33, ATRSZ33 | RSZ33; nucleic acid binding / nucleotide binding / zinc ion binding

Coordinates

chrA05:-:22308642..22310320

Molecular Weight (calculated)

33029.8 Da

IEP (calculated)

10.394

GRAVY (calculated)

-1.587

Length

287 amino acids

Sequence
(BLAST)

001: MPRYDDRYSS NDRYGGARLY VGHLSSRTRE RDLEHLFSKY GRIRDLDMKR DYAFIEFSDP RDADDARYRL DGRDFDGSRI TVEFARGTPR GSRDFSSSRG
101: PPPPGSGRCF NCGLEGHWAR DCSAGDWKNK CYRCGDRGHI ERNCKNSPKK LRRDASYSRS PVRSRSRSPP RRRRRSPSRS YSRDRSYSRS RSPVRKETDR
201: SPEAARSRSP EAARSRSPEL MVDNSPPSKD RKRSLTPEEG SPMREKNSPK ENELSPRGND GGGIGTNEQD RSHSPREDRS PVEDDDQ

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.