CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029777.1-P	Field mustard	nucleus	97.29	100.0
CDY41599	Canola	nucleus	94.58	97.21
CDX80835	Canola	nucleus	66.44	73.96
CDY11223	Canola	nucleus	65.76	73.76
CDX78183	Canola	nucleus	61.36	63.96
CDX73550	Canola	nucleus	61.36	63.73
CDX79732	Canola	nucleus	62.71	63.14
CDY07586	Canola	mitochondrion, nucleus	60.68	62.15
CDY52755	Canola	mitochondrion, nucleus	60.68	61.51
CDY46773	Canola	nucleus	63.39	59.18
CDY66028	Canola	cytosol	28.47	33.2
CDX91319	Canola	nucleus	32.54	32.11
CDX86974	Canola	nucleus	29.15	31.97
CDY00202	Canola	nucleus	29.49	31.64
CDY50385	Canola	nucleus	32.54	31.17
CDX97264	Canola	nucleus	31.86	30.82
CDY22050	Canola	nucleus	32.2	30.74
CDX94214	Canola	cytosol	20.34	30.0
CDX68538	Canola	nucleus	28.14	29.43
CDY08133	Canola	cytosol	28.14	28.72
CDY05936	Canola	nucleus	28.47	28.47
CDX95008	Canola	nucleus	28.47	26.5
CDY45333	Canola	nucleus, plastid, vacuole	9.83	23.77
CDY61855	Canola	nucleus	28.81	14.38

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078I3S3	UniProt:A0A078I3S3	EnsemblPlants:CDY44717
ProteinID:CDY44717	ProteinID:CDY44717.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00080695001	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI0003E5D027	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

BnaA05g28890DBnaA05g28890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3S3]

Coordinates

chrLK032599:+:177191..179461

Molecular Weight (calculated)

33884.7 Da

IEP (calculated)

10.473

GRAVY (calculated)

-1.585

Length

295 amino acids

Sequence
(BLAST)

001: MPRYDDRYSS NDRYGGARLY VGHLSSRTRE RDLEHLFSKY GRIRDLDMKR DYAFIEFSDP RDADDARYRL DGRDFDGSRI TVEFARGTPR GSRDFSSSRG
101: PPPPGSGRCF NCGLEGHWAR DCSAGDWKNK CYRCGDRGHI ERNCKNSPKK LRRDASYSRS PVRSRSRSPP RRRRRSPSRS YSRDRSYSRS RSPVRKETDR
201: SPEAARSRSP EAARSRSPEA ARSRSPELMV DNSPPSKDRK RSLTPEEGSP MREKNSPKEN ELSPRGNDGG GIGTNEQDRS HSPREDRSPV EDDDQ

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.