Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86974 | Canola | nucleus | 97.09 | 99.26 |
| Bra019595.1-P | Field mustard | nucleus | 100.0 | 96.49 |
| CDX94214 | Canola | cytosol | 66.91 | 92.0 |
| CDY08133 | Canola | cytosol | 93.82 | 89.27 |
| CDY05936 | Canola | nucleus | 94.91 | 88.47 |
| CDX68538 | Canola | nucleus | 88.36 | 86.17 |
| AT3G49430.4 | Thale cress | nucleus | 92.73 | 85.0 |
| VIT_16s0098g01020.t01 | Wine grape | nucleus | 70.91 | 78.0 |
| KRH64312 | Soybean | nucleus | 75.64 | 77.9 |
| KRH53616 | Soybean | nucleus | 72.36 | 75.67 |
| GSMUA_Achr1P06160_001 | Banana | nucleus | 67.64 | 74.7 |
| Solyc03g082380.2.1 | Tomato | nucleus | 72.36 | 71.07 |
| CDY66028 | Canola | cytosol | 58.18 | 63.24 |
| CDX91319 | Canola | nucleus | 64.0 | 58.86 |
| CDX97264 | Canola | nucleus | 63.64 | 57.38 |
| CDY22050 | Canola | nucleus | 63.64 | 56.63 |
| CDY50385 | Canola | nucleus | 63.27 | 56.49 |
| PGSC0003DMT400008347 | Potato | cytosol | 65.09 | 55.76 |
| CDX95008 | Canola | nucleus | 53.82 | 46.69 |
| CDY61855 | Canola | nucleus | 90.55 | 42.13 |
| CDY41599 | Canola | nucleus | 31.27 | 29.97 |
| CDY44717 | Canola | nucleus | 31.64 | 29.49 |
| CDX80835 | Canola | nucleus | 28.36 | 29.43 |
| CDY11223 | Canola | nucleus | 27.64 | 28.9 |
| CDX79732 | Canola | nucleus | 30.55 | 28.67 |
| CDX78183 | Canola | nucleus | 28.73 | 27.92 |
| CDX73550 | Canola | nucleus | 28.36 | 27.46 |
| CDY07586 | Canola | mitochondrion, nucleus | 28.0 | 26.74 |
| CDY46773 | Canola | nucleus | 30.55 | 26.58 |
| CDY52755 | Canola | mitochondrion, nucleus | 28.0 | 26.46 |
| CDY45333 | Canola | nucleus, plastid, vacuole | 4.73 | 10.66 |
Protein Annotations
| EnsemblPlants:CDY00202 | EnsemblPlantsGene:GSBRNA2T00109737001 | Gene3D:3.30.70.330 | GO:A0A078EGJ0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43933 | PANTHER:PTHR43933:SF5 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY00202 | ProteinID:CDY00202.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EDBC9F | MapMan:16.4.6.1 | : |
Description
BnaA06g21030D
Coordinates
chrLK031917:+:116926..119623
Molecular Weight (calculated)
31268.6 Da
IEP (calculated)
11.104
GRAVY (calculated)
-1.092
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFV EFEHARDAED AVDGRDGYNF DGCRLRVELA HGGRGQSSGD RRGGGGSARF
101: GVSRHSEFRV IVRGLPSSAS WQDLKDHMRK AGDVCFAEVT RDSDGTYGLV DYTNYDDMKY AIRKLDDTEF RNPWARGYIR VKKYESSQSR SPSRSRSRSR
201: SRGRGRSPSR SISRSRSPRK DLSKSPRRSL SRSISKSRSP SPDRKKSPPR AMSKSRSRSR SRSRSLSKSP AKVYK
101: GVSRHSEFRV IVRGLPSSAS WQDLKDHMRK AGDVCFAEVT RDSDGTYGLV DYTNYDDMKY AIRKLDDTEF RNPWARGYIR VKKYESSQSR SPSRSRSRSR
201: SRGRGRSPSR SISRSRSPRK DLSKSPRRSL SRSISKSRSP SPDRKKSPPR AMSKSRSRSR SRSRSLSKSP AKVYK
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.