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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH53616 Soybean nucleus 94.38 95.82
CDX94214 Canola cytosol 62.55 83.5
VIT_16s0098g01020.t01 Wine grape nucleus 77.15 82.4
CDX86974 Canola nucleus 77.53 76.95
Solyc03g082380.2.1 Tomato nucleus 79.78 76.07
Bra017986.1-P Field mustard nucleus 80.9 76.06
CDY00202 Canola nucleus 77.9 75.64
Bra019595.1-P Field mustard nucleus 80.15 75.09
CDY08133 Canola cytosol 80.15 74.05
CDY05936 Canola nucleus 80.9 73.22
AT3G49430.4 Thale cress nucleus 80.15 71.33
Bra029955.1-P Field mustard nucleus 68.91 70.77
GSMUA_Achr1P06160_001 Banana nucleus 65.54 70.28
CDX68538 Canola nucleus 74.16 70.21
KRG92904 Soybean nucleus 60.3 58.33
PGSC0003DMT400008347 Potato cytosol 68.91 57.32
KRG96443 Soybean nucleus 65.54 55.91
KRH68188 Soybean nucleus 62.17 55.52
KRH75557 Soybean cytosol 17.23 41.44
CDY61855 Canola nucleus 75.28 34.01
KRG95876 Soybean nucleus 29.59 27.53
KRH67593 Soybean endoplasmic reticulum 29.59 27.53
KRH67596 Soybean nucleus 28.09 25.08
KRG95883 Soybean nucleus 27.34 24.58
KRH42195 Soybean endoplasmic reticulum 22.47 21.82
KRH58317 Soybean nucleus 13.11 15.98
Protein Annotations
EntrezGene:100786491MapMan:16.4.6.1Gene3D:3.30.70.330EMBL:ACUP02002753EnsemblPlantsGene:GLYMA_04G229300GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0005488UniProt:I1JYJ0InterPro:IPR000504InterPro:IPR012677
EnsemblPlants:KRH64312ProteinID:KRH64312ProteinID:KRH64312.1InterPro:Nucleotide-bd_a/b_plait_sfPFAM:PF00076PFscan:PS50102
PANTHER:PTHR43933PANTHER:PTHR43933:SF5InterPro:RBD_domain_sfInterPro:RRM_domSMART:SM00360SUPFAM:SSF54928
UniParc:UPI0002339DADSEG:seg::::
Description
hypothetical protein
Coordinates
chr4:+:49818649..49823989
Molecular Weight (calculated)
29957.9 Da
IEP (calculated)
11.036
GRAVY (calculated)
-0.978
Length
267 amino acids
Sequence
(BLAST)
001: MSGRFSRTIY VGNLPSDIRE SEIEDLFYKY GRIMDIELKV PPRPPCYCFV EFDNARDAED AIRGRDGYNF DGCRLRVELA HGGRGPSSSD RRGYGGGGGN
101: GGAGGGRFGI SRHSEFRVIV RGLPSSASWQ DLKDHMRKAG DVCFAEVSRD SEGTFGIVDY TNYDDMKYAI RKLDDTEFRN PWARAYIRVR KYESSRSRSR
201: SRSPSRSPSR SRSPKRVRSR SLERSVSRSR SRSQSASPIK SSRPRSRSRS RSRSGSGSPH QVLSGSG
Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.