CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08133	Canola	cytosol	97.29	99.31
CDX86974	Canola	nucleus	88.14	96.65
CDY00202	Canola	nucleus	88.47	94.91
CDX94214	Canola	cytosol	63.05	93.0
CDX68538	Canola	nucleus	84.75	88.65
AT3G49430.4	Thale cress	nucleus	88.14	86.67
KRH64312	Soybean	nucleus	73.22	80.9
KRH53616	Soybean	nucleus	71.53	80.23
VIT_16s0098g01020.t01	Wine grape	nucleus	66.1	78.0
GSMUA_Achr1P06160_001	Banana	nucleus	62.03	73.49
Solyc03g082380.2.1	Tomato	nucleus	67.8	71.43
CDY66028	Canola	cytosol	54.58	63.64
CDX91319	Canola	nucleus	58.98	58.19
PGSC0003DMT400008347	Potato	cytosol	62.71	57.63
CDX97264	Canola	nucleus	58.64	56.72
CDY22050	Canola	nucleus	59.32	56.63
CDY50385	Canola	nucleus	58.64	56.17
CDX95008	Canola	nucleus	50.51	47.0
CDY61855	Canola	nucleus	86.78	43.32
CDY41599	Canola	nucleus	28.14	28.92
CDY44717	Canola	nucleus	28.47	28.47
CDX80835	Canola	nucleus	25.42	28.3
CDX79732	Canola	nucleus	27.8	27.99
CDY11223	Canola	nucleus	24.75	27.76
CDX78183	Canola	nucleus	25.76	26.86
CDX73550	Canola	nucleus	25.42	26.41
CDY46773	Canola	nucleus	27.8	25.95
CDY07586	Canola	mitochondrion, nucleus	25.08	25.69
CDY52755	Canola	mitochondrion, nucleus	25.08	25.43
CDY45333	Canola	nucleus, plastid, vacuole	4.41	10.66

Protein Annotations

EnsemblPlants:CDY05936	EnsemblPlantsGene:GSBRNA2T00121756001	Gene3D:3.30.70.330	GO:A0A078EXN6	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43933	PANTHER:PTHR43933:SF5	PFAM:PF00076	PFscan:PS50102	ProteinID:CDY05936	ProteinID:CDY05936.1
SEG:seg	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDBEB1	MapMan:16.4.6.1	:

Description

BnaC08g21130D

Coordinates

chrLK031966:+:668294..671327

Molecular Weight (calculated)

33037.7 Da

IEP (calculated)

10.831

GRAVY (calculated)

-0.982

Length

295 amino acids

Sequence
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFV EFEHARDAED AIDGRDGYNF DGCRLRVELA HGGRGQSSGD RRGGGGYRGG
101: GGGYGSGGGG GGGSARFGVS RHSEFRVIVR GLPSSASWQD LKDHMRKAGD VCFAEVTRDS EGTYGVVDYT NYDDMKYAIR KLDDTEFRNP WARGYIRVTK
201: YESSQSRSPS RSRSRSRGRG RSPSRSVSRS RSPRKDLSKS PRRSLSRSVS KSRSPSPDRK KSPPRAMSRS RSRSLSKSPA KVYKKLHFRL LFERC

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.