CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005756.1-P	Field mustard	nucleus	84.79	96.96
CDX80835	Canola	nucleus	97.34	96.6
CDY41599	Canola	nucleus	73.38	67.25
CDY44717	Canola	nucleus	73.76	65.76
KRG95876	Soybean	nucleus	65.02	59.58
KRH67593	Soybean	endoplasmic reticulum	64.64	59.23
CDX73550	Canola	nucleus	62.36	57.75
CDX78183	Canola	nucleus	61.98	57.6
CDX79732	Canola	nucleus	63.5	57.0
CDY07586	Canola	mitochondrion, nucleus	61.98	56.6
CDY52755	Canola	mitochondrion, nucleus	61.98	56.01
PGSC0003DMT400060435	Potato	nucleus	63.88	56.0
KRH67596	Soybean	nucleus	63.12	55.52
CDY46773	Canola	nucleus	64.26	53.48
KRG95883	Soybean	nucleus	60.08	53.2
EES00292	Sorghum	nucleus	59.32	52.7
KXG21152	Sorghum	nucleus	61.22	51.6
Solyc09g005980.2.1	Tomato	nucleus	60.84	50.79
PGSC0003DMT400061471	Potato	nucleus	60.84	50.79
VIT_08s0040g02860.t01	Wine grape	nucleus	51.33	50.75
Solyc05g054920.2.1	Tomato	nucleus	65.02	50.74
TraesCS1A01G108000.2	Wheat	nucleus	52.85	50.0
Os05t0120100-01	Rice	mitochondrion, nucleus	60.84	49.54
TraesCS1D01G111000.2	Wheat	nucleus	53.99	49.48
TraesCS1B01G130200.3	Wheat	nucleus	53.99	49.48
Os01t0155600-01	Rice	nucleus	60.84	49.38
KXG21387	Sorghum	nucleus	49.43	49.06
HORVU1Hr1G024060.21	Barley	nucleus	55.51	48.83
Os03t0285900-01	Rice	nucleus	61.22	48.79
GSMUA_Achr6P15450_001	Banana	nucleus	62.36	48.66
GSMUA_Achr10P...	Banana	nucleus	59.7	48.31
TraesCS3B01G151100.1	Wheat	nucleus	58.94	47.99
Zm00001d011004_P008	Maize	nucleus	61.6	47.93
TraesCS3D01G134500.1	Wheat	nucleus	58.94	47.84
TraesCS1B01G065900.2	Wheat	nucleus	61.6	47.51
TraesCS1D01G051900.1	Wheat	nucleus	61.6	47.37
TraesCS1A01G049700.1	Wheat	nucleus	61.22	47.08
TraesCS3A01G308000.1	Wheat	nucleus	58.94	46.55
Zm00001d037543_P001	Maize	nucleus	31.56	46.11
EES18924	Sorghum	nucleus	59.7	46.04
Zm00001d011005_P005	Maize	nucleus	61.22	45.61
HORVU1Hr1G009950.7	Barley	nucleus, plastid	61.22	43.75
KRH42195	Soybean	endoplasmic reticulum	45.63	43.64
OQU77498	Sorghum	nucleus	17.87	42.34
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	59.7	42.32
KRH58317	Soybean	nucleus	32.7	39.27
Os05t0162600-01	Rice	nucleus	48.67	37.87
CDY66028	Canola	cytosol	28.9	30.04
Zm00001d035551_P007	Maize	nucleus	42.59	28.57
CDX94214	Canola	cytosol	21.67	28.5
CDX91319	Canola	nucleus	32.32	28.43
CDX86974	Canola	nucleus	28.52	27.88
CDX97264	Canola	nucleus	32.32	27.87
CDY00202	Canola	nucleus	28.9	27.64
CDY50385	Canola	nucleus	32.32	27.6
CDY22050	Canola	nucleus	32.32	27.51
CDY08133	Canola	cytosol	27.76	25.26
KXG21391	Sorghum	nucleus	38.4	25.25
CDX68538	Canola	nucleus	26.62	24.82
CDY05936	Canola	nucleus	27.76	24.75
CDX95008	Canola	nucleus	29.66	24.61
CDY45333	Canola	nucleus, plastid, vacuole	10.65	22.95
CDY61855	Canola	nucleus	27.38	12.18

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078FGP0	UniProt:A0A078FGP0	EnsemblPlants:CDY11223
ProteinID:CDY11223	ProteinID:CDY11223.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00049244001	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI0003E61242	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

BnaA03g00590DBnaA03g00590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGP0]

Coordinates

chrLK032010:+:271462..273554

Molecular Weight (calculated)

29469.0 Da

IEP (calculated)

10.731

GRAVY (calculated)

-1.407

Length

263 amino acids

Sequence
(BLAST)

001: MPRYEDRHGS TRLYVGHLSS RTRTRDVERL FSKYGRVRDV DMKRDFAFVD FSDPRDADDA RYRLDGRDVD GSRIVVEFAK GTPRGSGSGY GSREISSSRG
101: GPPPPGSGRC FNCGLDGHWA RDCTAGDWKN KCYRCGDRGH IERNCKNSPK KLKRDQSYSR SPVRSRSPPR PSRRNRSRSK SPSYSRSRSP VRTEKARTPE
201: PAARSRSPEP TVVNSPPLKD INHSLSPNEK SPVPEKNGQS PKGQENGNGT NGQDHSPRDE PSP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.