CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029777.1-P	Field mustard	nucleus	97.21	97.21
CDY44717	Canola	nucleus	97.21	94.58
CDY11223	Canola	nucleus	67.25	73.38
CDX80835	Canola	nucleus	67.6	73.21
CDX78183	Canola	nucleus	62.37	63.25
CDX73550	Canola	nucleus	62.37	63.03
CDX79732	Canola	nucleus	63.76	62.46
CDY07586	Canola	mitochondrion, nucleus	61.67	61.46
CDY52755	Canola	mitochondrion, nucleus	61.67	60.82
CDY46773	Canola	nucleus	64.46	58.54
CDY66028	Canola	cytosol	29.27	33.2
CDX91319	Canola	nucleus	33.45	32.11
CDX86974	Canola	nucleus	29.62	31.6
CDY00202	Canola	nucleus	29.97	31.27
CDY50385	Canola	nucleus	33.45	31.17
CDX97264	Canola	nucleus	33.1	31.15
CDY22050	Canola	nucleus	33.45	31.07
CDX94214	Canola	cytosol	20.91	30.0
CDX68538	Canola	nucleus	28.57	29.08
CDY08133	Canola	cytosol	28.57	28.37
CDY05936	Canola	nucleus	28.92	28.14
CDX95008	Canola	nucleus	29.27	26.5
CDY45333	Canola	nucleus, plastid, vacuole	10.1	23.77
CDY61855	Canola	nucleus	29.27	14.21

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078HW43	UniProt:A0A078HW43	EnsemblPlants:CDY41599
ProteinID:CDY41599	ProteinID:CDY41599.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00073247001	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756
UniParc:UPI0004EBE7D9	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

BnaC05g43360DBnaC05g43360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW43]

Coordinates

chrLK032501:-:165397..167666

Molecular Weight (calculated)

32996.8 Da

IEP (calculated)

10.294

GRAVY (calculated)

-1.558

Length

287 amino acids

Sequence
(BLAST)

001: MPRYDDRYSS NDRYGGARLY VGHLSSRTRE RDLEHLFSKY GRIRDLDMKR DYAFIEFSDP RDADDARYRL DGRDFDGSRI TVEFARGTPR GSREFSSSSR
101: GPPPGSGRCF NCGLEGHWAR DCSAGDWKNK CYRCGDRGHI ERNCKNSPKK LRRDASYSRS PVRSRSRSPP RRRRRSPSRS YSGDRSYSRS RSPVRKETDR
201: SPEAARSRSP EAARSRSPEL MVDNSPPSKD RKRSLTLEEG SPMREKNSPK EKELSPRGND DGGIGTNEQD RSPSPREDRS PVEDDEQ

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.