CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76092
CDX80910
CDY02941
CDY07084
CDY10512
CDY11283
CDY24176
CDY45430
CDY65665
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09140.1	CDY10512	AT1G53720.1	16497658
AT1G09140.1	CDY72459	AT1G53720.1	16497658
AT1G09140.1	CDY45430	AT2G29210.1	21798944
AT1G09140.1	CDY65665	AT2G29210.1	21798944
AT1G09140.1	CDY07084	AT3G13570.1	18674533
AT1G09140.1	CDY24176	AT3G13570.1	18674533
AT1G09140.1	CDX76092	AT3G55460.1	18674533
AT1G09140.1	CDY02941	AT3G55460.1	18674533
AT1G09140.1	CDX80910	AT5G04280.1	21798944
AT1G09140.1	CDY11283	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018581.1-P	Field mustard	cytosol	89.33	97.41
AT1G09140.1	Thale cress	cytosol	87.75	82.84
CDX95008	Canola	nucleus	86.17	68.77
TraesCS3B01G293100.1	Wheat	cytosol	68.38	67.84
KXG32406	Sorghum	cytosol	69.17	67.57
TraesCS3D01G260200.1	Wheat	cytosol	67.98	67.45
TraesCS3A01G260000.1	Wheat	cytosol	67.98	67.45
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	66.01	66.01
CDX94214	Canola	cytosol	52.17	66.0
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	66.01	65.75
KRG92904	Soybean	nucleus	71.54	65.58
Solyc01g099810.2.1	Tomato	nucleus	67.59	64.77
VIT_14s0060g02290.t01	Wine grape	nucleus	73.12	64.24
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	66.01	62.08
Zm00001d041673_P001	Maize	cytosol	27.27	60.53
Os03t0344100-02	Rice	mitochondrion, nucleus	68.38	60.49
Zm00001d040672_P013	Maize	nucleus	69.96	60.41
TraesCS2D01G112200.1	Wheat	nucleus	67.19	59.86
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	67.19	59.86
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	67.59	59.79
KXG21829	Sorghum	nucleus	65.61	59.71
Zm00001d047498_P003	Maize	nucleus	67.19	59.65
EER94870	Sorghum	mitochondrion, nucleus	67.19	59.44
Os07t0673500-01	Rice	nucleus	69.17	59.12
CDX86974	Canola	nucleus	62.45	58.74
CDX91319	Canola	nucleus	69.17	58.53
CDY00202	Canola	nucleus	63.24	58.18
CDY22050	Canola	nucleus	70.75	57.93
CDX97264	Canola	nucleus	69.57	57.7
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	66.8	57.68
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	66.8	57.29
CDY50385	Canola	nucleus	69.57	57.14
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	66.01	57.0
TraesCS4A01G157700.1	Wheat	mitochondrion	66.01	56.42
Os05t0364600-01	Rice	nucleus	69.96	55.49
CDX68538	Canola	nucleus	61.66	55.32
CDY08133	Canola	cytosol	62.45	54.67
CDY05936	Canola	nucleus	63.64	54.58
GSMUA_Achr8P10150_001	Banana	nucleus	72.73	52.57
GSMUA_Achr11P...	Banana	nucleus	71.54	52.31
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	67.59	50.89
TraesCS2B01G130400.1	Wheat	nucleus	67.19	49.13
PGSC0003DMT400063701	Potato	nucleus	60.47	46.36
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	62.06	45.38
Os01t0316600-01	Rice	plastid	17.39	35.48
CDX78183	Canola	nucleus	33.6	30.04
CDX73550	Canola	nucleus	33.6	29.93
CDX79732	Canola	nucleus	33.99	29.35
CDY41599	Canola	nucleus	33.2	29.27
CDY11223	Canola	nucleus	30.04	28.9
CDY07586	Canola	mitochondrion, nucleus	32.81	28.82
CDX80835	Canola	nucleus	30.04	28.68
CDY52755	Canola	mitochondrion, nucleus	32.81	28.52
CDY44717	Canola	nucleus	33.2	28.47
CDY46773	Canola	nucleus	34.39	27.53
CDY61855	Canola	nucleus	62.85	26.9
Zm00001d009821_P001	Maize	plastid	32.81	26.1
CDY45333	Canola	nucleus, plastid, vacuole	5.53	11.48

Protein Annotations

MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:A0A078JEJ8	UniProt:A0A078JEJ8	EnsemblPlants:CDY66028	ProteinID:CDY66028
ProteinID:CDY66028.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00051196001
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933
PANTHER:PTHR43933:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EE8265
SEG:seg	:	:	:	:	:

Description

BnaA06g37780DBnaA06g37780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEJ8]

Coordinates

chrLK035050:+:2433..5530

Molecular Weight (calculated)

28939.6 Da

IEP (calculated)

10.260

GRAVY (calculated)

-0.883

Length

253 amino acids

Sequence
(BLAST)

001: MSSSRWNRTI YVGNLPGDIR MREVEDLFYK YGPIVDIDLK IPPRPPGYAF VEFEDPRDAD DAIYGRDGYD FDGCRLRVEI AHGGRRGSSS VDRHSSGSRA
101: PSRRSDYRVL VTGLPPSASW QDLKDHMRKA GDVCFSEVFR DRGGMSGVVD YSNYDDMKYA IRKLDDSEFR NAFSRAYIRV REYESRSVSR SPYYSRSRSR
201: SRGRSYSYSS RSVSPARSSR SPTPYSSISR SRSRSRSNSP VSPVSLKKQM FIS

Best Arabidopsis Sequence Match ( AT1G09140.1 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.