Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G260200.1 | Wheat | cytosol | 98.04 | 98.04 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 97.65 | 97.65 |
| KXG32406 | Sorghum | cytosol | 85.49 | 84.17 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 72.94 | 73.52 |
| Zm00001d040672_P013 | Maize | nucleus | 83.92 | 73.04 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 95.29 | 72.32 |
| Bra018581.1-P | Field mustard | cytosol | 65.1 | 71.55 |
| CDY66028 | Canola | cytosol | 67.45 | 67.98 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 74.12 | 66.55 |
| AT1G09140.1 | Thale cress | cytosol | 67.84 | 64.55 |
| VIT_14s0060g02290.t01 | Wine grape | nucleus | 72.16 | 63.89 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 72.94 | 62.84 |
| Solyc01g099810.2.1 | Tomato | nucleus | 64.31 | 62.12 |
| GSMUA_Achr11P... | Banana | nucleus | 80.78 | 59.54 |
| CDX91319 | Canola | nucleus | 69.41 | 59.2 |
| KRG92904 | Soybean | nucleus | 63.53 | 58.7 |
| KRG96443 | Soybean | nucleus | 70.98 | 57.83 |
| CDX97264 | Canola | nucleus | 69.02 | 57.7 |
| Bra018550.1-P | Field mustard | nucleus | 58.43 | 57.09 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 68.24 | 56.49 |
| CDY22050 | Canola | nucleus | 68.24 | 56.31 |
| Bra036267.1-P | Field mustard | nucleus | 68.63 | 56.09 |
| CDY50385 | Canola | nucleus | 67.45 | 55.84 |
| AT1G02840.1 | Thale cress | nucleus | 66.27 | 55.78 |
| KRH68188 | Soybean | nucleus | 64.71 | 55.18 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 75.69 | 55.14 |
| PGSC0003DMT400029666 | Potato | nucleus | 67.45 | 54.6 |
| AT4G02430.4 | Thale cress | nucleus | 62.35 | 54.45 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 60.78 | 53.08 |
| CDX95008 | Canola | nucleus | 64.31 | 51.73 |
| Solyc09g075090.1.1 | Tomato | nucleus | 61.57 | 51.48 |
| PGSC0003DMT400063701 | Potato | nucleus | 61.18 | 47.27 |
| Solyc06g009060.2.1 | Tomato | nucleus | 40.0 | 38.93 |
| Os01t0316600-01 | Rice | plastid | 18.04 | 37.1 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 34.51 | 25.73 |
| TraesCS1A01G108000.2 | Wheat | nucleus | 27.45 | 25.18 |
| TraesCS3A01G308000.1 | Wheat | nucleus | 30.98 | 23.72 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G260000.1 | EnsemblPlantsGene:TraesCS3A01G260000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:482403327..482406628
Molecular Weight (calculated)
29009.7 Da
IEP (calculated)
9.828
GRAVY (calculated)
-0.822
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRNSCTIY VGNLPGDIRE REVEDLFYKY GCIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVELA HGGRAQSYSY DRPSSFSNGR
101: RGGVSRRSEF RVMVDGLPSS ASWQDLKDHM RRAGDVCFSD VYREGGATVG VVDYTNYDDM KYAIRKLDDT EFRNAFSRAY IRVRQYDARS RSRSRSLSYL
201: RSRSYSRSVS RSPLPVDERS LSRSRSPVSS VSGKSVSRSP RSRSLSRSAS PVRSD
101: RGGVSRRSEF RVMVDGLPSS ASWQDLKDHM RRAGDVCFSD VYREGGATVG VVDYTNYDDM KYAIRKLDDT EFRNAFSRAY IRVRQYDARS RSRSRSLSYL
201: RSRSYSRSVS RSPLPVDERS LSRSRSPVSS VSGKSVSRSP RSRSLSRSAS PVRSD
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.