Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91319 | Canola | nucleus | 90.42 | 78.93 |
| CDX97264 | Canola | nucleus | 91.57 | 78.36 |
| AT4G02430.4 | Thale cress | nucleus | 84.67 | 75.68 |
| Bra036267.1-P | Field mustard | nucleus | 89.66 | 75.0 |
| Bra018581.1-P | Field mustard | cytosol | 56.32 | 63.36 |
| KRH68188 | Soybean | nucleus | 70.88 | 61.87 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 57.85 | 59.22 |
| KXG32406 | Sorghum | cytosol | 58.62 | 59.07 |
| TraesCS3D01G260200.1 | Wheat | cytosol | 57.47 | 58.82 |
| KRG96443 | Soybean | nucleus | 70.11 | 58.47 |
| TraesCS3A01G260000.1 | Wheat | cytosol | 57.09 | 58.43 |
| EER94870 | Sorghum | mitochondrion, nucleus | 63.6 | 58.04 |
| TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 55.94 | 57.71 |
| Os03t0344100-02 | Rice | mitochondrion, nucleus | 63.22 | 57.69 |
| Zm00001d047498_P003 | Maize | nucleus | 62.84 | 57.54 |
| TraesCS1D01G232100.2 | Wheat | cytosol, mitochondrion, nucleus | 55.94 | 57.48 |
| TraesCS2D01G112200.1 | Wheat | nucleus | 62.45 | 57.39 |
| TraesCS2A01G111600.2 | Wheat | mitochondrion, nucleus | 62.45 | 57.39 |
| VIT_07s0005g00320.t01 | Wine grape | nucleus | 67.43 | 57.14 |
| HORVU2Hr1G019410.4 | Barley | mitochondrion, nucleus | 62.45 | 56.99 |
| PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 62.45 | 55.82 |
| Os07t0673500-01 | Rice | nucleus | 63.22 | 55.74 |
| Solyc09g075090.1.1 | Tomato | nucleus | 64.75 | 55.41 |
| KXG21829 | Sorghum | nucleus | 58.62 | 55.04 |
| TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 61.69 | 54.95 |
| PGSC0003DMT400029666 | Potato | nucleus | 66.28 | 54.92 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 56.32 | 54.65 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 60.92 | 54.27 |
| HORVU4Hr1G046940.7 | Barley | mitochondrion, nucleus | 60.92 | 53.9 |
| Bra019595.1-P | Field mustard | nucleus | 58.62 | 53.68 |
| Bra017986.1-P | Field mustard | nucleus | 58.24 | 53.52 |
| TraesCS4A01G157700.1 | Wheat | mitochondrion | 60.54 | 53.38 |
| Bra029955.1-P | Field mustard | nucleus | 52.87 | 53.08 |
| Zm00001d040672_P013 | Maize | nucleus | 59.39 | 52.9 |
| Os05t0364600-01 | Rice | nucleus | 62.84 | 51.41 |
| Zm00001d041673_P001 | Maize | cytosol | 21.84 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 65.9 | 49.71 |
| GSMUA_Achr8P10150_001 | Banana | nucleus | 65.9 | 49.14 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 62.45 | 47.11 |
| HORVU3Hr1G064550.7 | Barley | nucleus, peroxisome | 56.32 | 43.75 |
| Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 57.47 | 43.35 |
| Solyc06g009060.2.1 | Tomato | nucleus | 37.93 | 37.79 |
| Os01t0316600-01 | Rice | plastid | 16.48 | 34.68 |
| Bra029777.1-P | Field mustard | nucleus | 31.8 | 28.92 |
| Bra005756.1-P | Field mustard | nucleus | 23.37 | 26.52 |
| Bra023114.1-P | Field mustard | nucleus | 31.42 | 25.95 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 28.74 | 25.77 |
| Bra007004.1-P | Field mustard | nucleus | 28.74 | 25.25 |
| Zm00001d009821_P001 | Maize | plastid | 29.89 | 24.53 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | EnsemblPlantsGene:Bra018550 | EnsemblPlants:Bra018550.1 | EnsemblPlants:Bra018550.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M4DPV9 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43933 | PANTHER:PTHR43933:SF6 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000254732E | SEG:seg | : |
Description
AT1G09140 (E=1e-061) | SF2/ASF-like splicing modulator (SRP30)
Coordinates
chrA05:-:9170699..9172163
Molecular Weight (calculated)
29609.5 Da
IEP (calculated)
11.047
GRAVY (calculated)
-1.081
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRSSRTIY VGNLPGDIRE REVEDLFSKY GPVVQIDLKI PPRPPGYAFV EFEDPRDADD AIHGRDVLLF DPCCQVELAH GGRRSSNDAR SSGSRGGGRD
101: GGDRGRGPSR RSEFRGLPSS ASWQDLKDHM RKGGEVCFSQ VYRDGRGTTG IVDYTSYEDM KYAIKKLDDT EFRNAFSRGY VRVREYDSRR DSRSPSRGRS
201: YSKSRSRSRS RSRSRSPKAK SSRRSPAKST SRSPRSRSKS RSPPPRGYVS FLIFMFRLNI H
101: GGDRGRGPSR RSEFRGLPSS ASWQDLKDHM RKGGEVCFSQ VYRDGRGTTG IVDYTSYEDM KYAIKKLDDT EFRNAFSRGY VRVREYDSRR DSRSPSRGRS
201: YSKSRSRSRS RSRSRSPKAK SSRRSPAKST SRSPRSRSKS RSPPPRGYVS FLIFMFRLNI H
001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRWITV ETLDHLDHNI ISGFL
Arabidopsis Description
SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.