Factsheet for PGSC0003DMT400037966

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400016115
PGSC0003DMT400032709
PGSC0003DMT400038558
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400069100
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02840.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT1G02840.1	PGSC0003DMT400060435	AT2G37340.1	18674533
AT1G02840.1	PGSC0003DMT400061471	AT2G37340.1	18674533
AT1G02840.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT1G02840.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT1G02840.1	PGSC0003DMT400081835	AT3G13570.1	18674533
AT1G02840.1	PGSC0003DMT400038558	AT3G50670.1	18674533
AT1G02840.1	PGSC0003DMT400016115	AT5G18810.1	18674533
AT1G02840.1	PGSC0003DMT400032709	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029666	Potato	nucleus	71.58	66.35
VIT_07s0005g00320.t01	Wine grape	nucleus	68.15	64.61
KXG32406	Sorghum	cytosol	56.16	63.32
EER94870	Sorghum	mitochondrion, nucleus	61.3	62.59
Bra018550.1-P	Field mustard	nucleus	55.82	62.45
Os03t0344100-02	Rice	mitochondrion, nucleus	60.62	61.89
KRH68188	Soybean	nucleus	63.01	61.54
Zm00001d047498_P003	Maize	nucleus	59.93	61.4
TraesCS3B01G293100.1	Wheat	cytosol	53.42	61.18
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	59.59	60.84
TraesCS3A01G260000.1	Wheat	cytosol	53.08	60.78
TraesCS3D01G260200.1	Wheat	cytosol	53.08	60.78
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	58.9	60.56
TraesCS2D01G112200.1	Wheat	nucleus	58.9	60.56
Os07t0673500-01	Rice	nucleus	61.3	60.47
AT4G02430.4	Thale cress	nucleus	60.27	60.27
KXG21829	Sorghum	nucleus	56.85	59.71
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	51.71	59.45
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	51.37	59.29
CDX91319	Canola	nucleus	60.27	58.86
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	54.11	58.74
KRG96443	Soybean	nucleus	62.67	58.47
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	58.56	58.36
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	58.56	58.36
CDX97264	Canola	nucleus	60.96	58.36
Zm00001d041673_P001	Maize	cytosol	22.6	57.89
AT1G02840.1	Thale cress	nucleus	59.93	57.76
CDY50385	Canola	nucleus	60.62	57.47
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	57.88	57.29
CDY22050	Canola	nucleus	60.62	57.28
Solyc06g009060.2.1	Tomato	nucleus	51.37	57.25
TraesCS4A01G157700.1	Wheat	mitochondrion	57.88	57.09
Bra036267.1-P	Field mustard	nucleus	60.62	56.73
Zm00001d040672_P013	Maize	nucleus	56.51	56.31
Os05t0364600-01	Rice	nucleus	59.93	54.86
GSMUA_Achr8P10150_001	Banana	nucleus	65.75	54.86
GSMUA_Achr11P...	Banana	nucleus	63.36	53.47
TraesCS2B01G130400.1	Wheat	nucleus	60.27	50.87
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	54.11	47.02
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	54.79	46.24
PGSC0003DMT400063701	Potato	nucleus	51.03	45.15
PGSC0003DMT400008347	Potato	cytosol	47.95	43.61
Os01t0316600-01	Rice	plastid	14.73	34.68
PGSC0003DMT400060435	Potato	nucleus	28.42	27.67
PGSC0003DMT400061471	Potato	nucleus	27.4	25.4
Zm00001d009821_P001	Maize	plastid	27.05	24.84

Protein Annotations

EntrezGene:102592958	MapMan:16.4.6.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1B661	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400014645	PGSC:PGSC0003DMG400014645	EnsemblPlants:PGSC0003DMT400037966	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029481AE	RefSeq:XP_006359376.1
SEG:seg	:	:	:	:	:

Description

Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014645]

Coordinates

chr6:+:528436..538187

Molecular Weight (calculated)

32929.0 Da

IEP (calculated)

10.484

GRAVY (calculated)

-1.038

Length

292 amino acids

Sequence
(BLAST)

001: MDHQHGPWSD LRSVDGDRTM SRSSRTIYVG NLPGDIRERE VEDLFYKYGP IAHIDLKIPP RPPGYAFVEF EEARDAEDAI RGRDGYDFDG HRLRVELAHG
101: GRGNSSSNDR YNSGNNSGHN GGVLVTGLPH SASWQDLKDH MRRAGDVCFS QVFREGSGTT GIVDYTNYDD MKYAIKKLDE SEFRNAFSRS TIRVKEHDSR
201: SRSRSRSYSR GKSGKSGSRS RSYSRSRSRS KSPKAKSSKR TKSRSRSVSS QPRSGLKGRS LSRAAELLVS SFPITSPDEW LLNFLVHDQN RT

Best Arabidopsis Sequence Match ( AT1G02840.3 )
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFSKY GPVVQIDLKV PPRPPGYAFV EFDDARDAED AIHGRDGYDF DGHRLRVELA HGGRRSSDDT RGSFNGGGRG
101: GGRGRGDGGS RGPSRRSEFR VLVTGLPSSA SWQDLKDHMR KGGDVCFSQV YRDARGTTGV VDYTCYEDMK YALKKLDDTE FRNAFSNGYV RVREYDSRKD
201: SRSPSRGRSY SKSRSRSRGR SVSRSRSRSR SRSRSPKAKS SRRSPAKSTS RSPGPRSKSR SPSPRRYGFT YD

Arabidopsis Description

SR34Serine/arginine-rich-splicing factor SR34 [Source:UniProtKB/Swiss-Prot;Acc:O22315]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.