Factsheet for PGSC0003DMT400016115

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400016115
PGSC0003DMT400029666
PGSC0003DMT400032709
PGSC0003DMT400037966
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400063701
PGSC0003DMT400069100
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18810.1	PGSC0003DMT400029666	AT1G02840.1	18674533
AT5G18810.1	PGSC0003DMT400037966	AT1G02840.1	18674533
AT5G18810.1	PGSC0003DMT400063701	AT1G09140.1	18674533
AT5G18810.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT5G18810.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT5G18810.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT5G18810.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT5G18810.1	PGSC0003DMT400060435	AT2G37340.1	18674533
AT5G18810.1	PGSC0003DMT400061471	AT2G37340.1	18674533
AT5G18810.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT5G18810.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT5G18810.1	PGSC0003DMT400081835	AT3G13570.1	18674533
AT5G18810.1	PGSC0003DMT400016115	AT5G18810.1	18674533
AT5G18810.1	PGSC0003DMT400032709	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080660.2.1	Tomato	nucleus	59.4	95.18
KRH02172	Soybean	nucleus	57.52	61.2
KRH50944	Soybean	nucleus	55.26	60.49
VIT_14s0030g00480.t01	Wine grape	nucleus	62.41	57.84
GSMUA_Achr5P27460_001	Banana	nucleus	19.55	55.32
AT5G18810.1	Thale cress	nucleus	48.5	54.66
GSMUA_Achr5P27470_001	Banana	nucleus	24.44	54.17
GSMUA_Achr8P00210_001	Banana	mitochondrion, nucleus	21.43	53.27
Os03t0363800-01	Rice	nucleus	47.74	52.26
TraesCS4B01G156200.1	Wheat	nucleus	45.49	50.63
TraesCS4D01G162900.1	Wheat	nucleus	45.11	50.42
KXG39307	Sorghum	nucleus	45.49	50.21
HORVU4Hr1G045510.3	Barley	nucleus	43.98	48.95
TraesCS4A01G141800.2	Wheat	nucleus	45.86	48.8
Zm00001d029256_P002	Maize	nucleus	44.74	48.57
PGSC0003DMT400081835	Potato	nucleus	34.21	36.69
HORVU7Hr1G080760.3	Barley	mitochondrion	20.68	32.74
PGSC0003DMT400010908	Potato	nucleus	33.46	31.79
HORVU1Hr1G043200.4	Barley	mitochondrion, nucleus	20.68	29.57
GSMUA_Achr8P00220_001	Banana	extracellular	22.93	27.6
PGSC0003DMT400045694	Potato	nucleus	24.06	24.81
PGSC0003DMT400032709	Potato	nucleus	23.68	24.8

Protein Annotations

EntrezGene:102588722	MapMan:16.4.6.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0016607	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1A748	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400006298	PGSC:PGSC0003DMG400006298	EnsemblPlants:PGSC0003DMT400016115	PFscan:PS50102	PANTHER:PTHR23147	PANTHER:PTHR23147:SF7
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928
UniParc:UPI0002948BEB	RefSeq:XP_006356992.1	SEG:seg	:	:	:

Description

Serine/arginine rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006298]

Coordinates

chr1:-:60520317..60527111

Molecular Weight (calculated)

30811.0 Da

IEP (calculated)

11.956

GRAVY (calculated)

-1.505

Length

266 amino acids

Sequence
(BLAST)

001: MGRYRSRSRS LSRSCSPVRH KRHDEPRDRR RERRSPGPSG LLVRNIPLSA RPEDLRVPFE RYGPIRDVYL PKNYHTGEPR GFGFVKFRYA EDAAEAKAHL
101: NNTVIGGRDI RIVFAEDNRK TPKEMRKVLR TSGPSARGSY RRQSPPSRRY HSYSRSASPA RRDSRDRDHE KNHDDDYYSP RRSRSKSRSI SPRDDRNCRS
201: KGRSSRQSRP MSRSNSPCIQ KKGRFSMSPR DNSQIAHDVD STPRRLKSPG RNGGSSARSP SRSYSR

Best Arabidopsis Sequence Match ( AT5G18810.2 )
(BLAST)

001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR

Arabidopsis Description

SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.