Factsheet for PGSC0003DMT400011166

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000674
PGSC0003DMT400009249
PGSC0003DMT400010908
PGSC0003DMT400032709
PGSC0003DMT400048580
PGSC0003DMT400060435
PGSC0003DMT400061471
PGSC0003DMT400063701
PGSC0003DMT400071859
PGSC0003DMT400079640
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53720.1	PGSC0003DMT400063701	AT1G09140.1	16497658
AT1G53720.1	PGSC0003DMT400060435	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400061471	AT2G37340.1	16497658
AT1G53720.1	PGSC0003DMT400010908	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400081835	AT3G13570.1	16497658
AT1G53720.1	PGSC0003DMT400000674	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400048580	AT3G61860.1	16497658
AT1G53720.1	PGSC0003DMT400009249	AT4G35800.1	16497658
AT1G53720.1	PGSC0003DMT400071859	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400079640	AT5G62190.1	16497658
AT1G53720.1	PGSC0003DMT400032709	AT5G64200.2	16497658

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011164	Potato	cytosol	43.15	68.11
Solyc12g049430.1.1	Tomato	cytoskeleton, cytosol, nucleus	87.33	66.75
PGSC0003DMT400069100	Potato	cytosol	78.08	66.47
PGSC0003DMT400056014	Potato	cytosol	40.75	66.11
Solyc02g061800.2.1	Tomato	cytosol	61.99	61.77
Solyc12g038020.1.1	Tomato	cytosol	29.79	51.18
PGSC0003DMT400043897	Potato	cytoskeleton, cytosol, nucleus	32.19	48.7
Solyc12g038070.1.1	Tomato	endoplasmic reticulum, extracellular, nucleus	21.23	39.24
AT1G53720.1	Thale cress	nucleus	65.75	37.94
HORVU1Hr1G040970.1	Barley	cytosol, endoplasmic reticulum, mitochondrion	29.79	36.1
TraesCS3D01G065600.1	Wheat	cytosol	40.75	35.63
TraesCS3A01G064900.1	Wheat	cytosol	48.63	35.06
HORVU1Hr1G015670.5	Barley	cytosol	28.77	34.71
HORVU6Hr1G042040.1	Barley	endoplasmic reticulum	24.32	34.47
Zm00001d036620_P001	Maize	nucleus	52.74	34.45
Bra030819.1-P	Field mustard	cytosol	61.99	33.27
TraesCS4A01G064400.1	Wheat	nucleus	54.45	33.26
TraesCS4D01G241400.1	Wheat	nucleus	53.77	32.64
TraesCS4B01G241800.1	Wheat	nucleus	51.71	32.4
GSMUA_Achr10P...	Banana	cytosol	61.3	32.31
TraesCS7D01G457200.1	Wheat	nucleus	61.64	32.2
TraesCS7A01G469800.1	Wheat	nucleus	61.64	32.2
HORVU7Hr1G107520.5	Barley	nucleus	61.3	32.02
TraesCS7B01G371900.1	Wheat	nucleus	60.96	31.84
Os06t0670500-01	Rice	cytosol	61.3	31.74
VIT_19s0027g01660.t01	Wine grape	nucleus	68.84	31.5
EER88795	Sorghum	cytosol	60.27	31.48
KRH13056	Soybean	nucleus	68.15	31.44
KRG93223	Soybean	nucleus	68.49	31.25
Os06t0670400-00	Rice	cytosol	44.86	27.93
Solyc12g038030.1.1	Tomato	cytosol	8.56	26.88
CDY10512	Canola	nucleus	62.67	18.45
PGSC0003DMT400022853	Potato	cytosol	10.27	18.29
PGSC0003DMT400038471	Potato	cytosol	8.9	16.25
PGSC0003DMT400072698	Potato	mitochondrion, plastid	5.82	7.39
PGSC0003DMT400009946	Potato	mitochondrion	5.82	7.2
PGSC0003DMT400055240	Potato	cytosol	11.3	5.54
CDY72459	Canola	cytosol, extracellular, plastid	1.71	4.27
PGSC0003DMT400019171	Potato	cytosol	8.56	4.03

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	Gene3D:3.30.70.330	InterPro:CRIP	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR002130	InterPro:IPR012677	InterPro:IPR029000
UniProt:M0ZZ51	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400004370	PGSC:PGSC0003DMG400004370
EnsemblPlants:PGSC0003DMT400011166	PFscan:PS50072	PFscan:PS50102	PANTHER:PTHR11071	PANTHER:PTHR11071:SF156	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF50891	SUPFAM:SSF54928	UniParc:UPI0002959721	SEG:seg

Description

Multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400004370]

Coordinates

chr12:+:52880747..52882278

Molecular Weight (calculated)

34039.6 Da

IEP (calculated)

6.198

GRAVY (calculated)

-1.061

Length

292 amino acids

Sequence
(BLAST)

001: MASTGTGEKN LNASQFYITL RDDLDSLDGE HTVFGEITEG FDTLNRINEA YVDDKGKPYQ NIRIKHTYIL YDPFDDPSQL DDLIPDASPE RKPKDEIDDD
101: VRLEDDWMPK DEELGVREER EAHSRAVILE SVGDIPYAEM KPPDNVLFVC KLNPSTKEEA LYIIFSRFGT VTSAEIIRDH KTRDSHCYAF IEFEDKESCE
201: QAYFKMDNTK IDDRRIRVDF SQSVAKLWSQ YRPRNQRGSG VDAIKQQKEH NKQQHGGDCN SKYSKFLKTR KERRKHKGRK HRQITKTHPD SK

Best Arabidopsis Sequence Match ( AT1G53720.1 )
(BLAST)

001: MSVLIVTSLG DIVIDLHSDK CPLTCKNFLK LCKIKYYNGC LFHTVQKDFT AQTGDPTGTG AGGDSIYKFL YGEQARFYKD EIHLDLKHSK TGTVAMASGG
101: ENLNASQFYF TLRDDLDYLD GKHTVFGQIA EGFDTLTRIN EAYVDPKNRP YKNIRIKHTH ILDDPFDDPP QLAEMMPDAS PEGKPKEEVK DDVRLEDDWV
201: PMDEELGAQE LEEVIREKAA HSSAVVLESI GDIPEAEVKP PDNVLFVCKL NPVTEDEDLH TIFSRFGTVV SADVIRDFKT GDSLCYAFIE FENKESCEQA
301: YFKMDNALID DRRIHVDFSQ SVSKLWSQFR QKDSQKGKGN GCFKCGSTDH IAKDCVGGPS SKFIVKDQNR QHGGGEGYEM VFEGDVHETP KHNSHERERS
401: EKIQRRSPHG NGEGKRQHRD ERDDGRRQHD REDARELERK HRERKERESR EDEDRRRRRR REESRDKESR RERDEDDHRS HRDYKERRRE RDDRHGREAR
501: HERRDR

Arabidopsis Description

CYP59Peptidyl-prolyl cis-trans isomerase CYP59 [Source:UniProtKB/Swiss-Prot;Acc:Q6Q151]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.