Factsheet for PGSC0003DMT400000674

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010908
PGSC0003DMT400011164
PGSC0003DMT400011166
PGSC0003DMT400055636
PGSC0003DMT400056014
PGSC0003DMT400063701
PGSC0003DMT400069100
PGSC0003DMT400081835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	PGSC0003DMT400063701	AT1G09140.1	21798944
AT3G61860.1	PGSC0003DMT400011164	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400011166	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400056014	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400069100	AT1G53720.1	16497658
AT3G61860.1	PGSC0003DMT400055636	AT2G43370.1	15987817
AT3G61860.1	PGSC0003DMT400010908	AT3G13570.1	18674533
AT3G61860.1	PGSC0003DMT400081835	AT3G13570.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096180.2.1	Tomato	nucleus	82.92	81.22
PGSC0003DMT400048580	Potato	extracellular, nucleus	72.92	69.44
KRH06424	Soybean	nucleus	75.0	68.18
KRH47859	Soybean	nucleus	73.33	67.95
VIT_15s0046g00060.t01	Wine grape	endoplasmic reticulum	60.0	64.29
EES11769	Sorghum	nucleus	59.58	60.08
AT2G46610.1	Thale cress	nucleus	62.5	60.0
AT3G61860.1	Thale cress	nucleus	65.0	59.09
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	14.58	57.38
Os04t0118900-01	Rice	nucleus	57.92	56.73
TraesCS2A01G009400.2	Wheat	nucleus	57.5	56.33
TraesCS2D01G010300.1	Wheat	nucleus	57.08	54.15
TraesCS5A01G555800.1	Wheat	nucleus	59.17	52.59
TraesCS4B01G398900.1	Wheat	nucleus	59.17	52.01
EER92984	Sorghum	nucleus	57.08	51.5
TraesCSU01G114200.1	Wheat	nucleus	57.92	51.48
PGSC0003DMT400043937	Potato	nucleus	56.25	50.37
HORVU4Hr1G088790.4	Barley	nucleus	56.67	49.1
GSMUA_Achr11P...	Banana	extracellular, plastid	55.42	48.72
CDY22958	Canola	cytosol	12.5	42.86
CDX81436	Canola	cytosol	12.5	42.86
Zm00001d004425_P001	Maize	cytosol	17.08	33.61
PGSC0003DMT400037012	Potato	nucleus	52.5	31.74

Protein Annotations

EntrezGene:102590704	MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504
InterPro:IPR012677	UniProt:M0ZH53	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400000239	PGSC:PGSC0003DMG400000239
EnsemblPlants:PGSC0003DMT400000674	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RS31	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002952D7E	RefSeq:XP_006339738.1
RefSeq:XP_006339739.1	:	:	:	:	:

Description

Arginine/serine-rich splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000239]

Coordinates

chr1:-:73741742..73745068

Molecular Weight (calculated)

28498.1 Da

IEP (calculated)

9.735

GRAVY (calculated)

-1.164

Length

240 amino acids

Sequence
(BLAST)

001: MRPLFVGNIE YDARQPELER LFSKYGRIER VDMKSGFAFV YFEDERDAAD AIHSLDNMPF GYDKRRLSVE WAKGDRGRPR DDSKVAANQR PTRSLFVINF
101: DPIRTRVRDI ERHFEPYGKI LNVRIRRNFA FVQYENQEDA SKALECTHMS EILDRVVSVE YALRDDGERG DRYDSPRRDY GRHGDSPYRR SPSPMYHRGR
201: SNPDYGRPRS PAYEKYNGSS YDRYRSTEYG SYRSRSPVRR

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.