Factsheet for PGSC0003DMT400043937

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091750.2.1	Tomato	nucleus	80.22	98.62
KRH48257	Soybean	nucleus	68.28	72.33
KRH65157	Soybean	nucleus	67.54	71.83
GSMUA_Achr1P03880_001	Banana	nucleus	59.33	66.25
GSMUA_Achr5P10480_001	Banana	nucleus	58.58	64.88
GSMUA_Achr3P12360_001	Banana	nucleus	50.0	64.42
GSMUA_Achr1P16190_001	Banana	nucleus	40.67	62.64
VIT_15s0048g01870.t01	Wine grape	nucleus	72.39	58.79
Os02t0122800-02	Rice	nucleus	60.82	58.42
PGSC0003DMT400000674	Potato	nucleus	50.37	56.25
PGSC0003DMT400048580	Potato	extracellular, nucleus	52.24	55.56
TraesCS6A01G065400.2	Wheat	nucleus	56.34	53.55
TraesCSU01G119700.2	Wheat	nucleus	55.97	53.38
TraesCS6B01G088500.2	Wheat	nucleus	55.97	53.38
EES06200	Sorghum	nucleus	56.72	51.53
CDY57708	Canola	nucleus	60.07	47.49
CDX89418	Canola	nucleus	59.7	47.34
Bra013895.1-P	Field mustard	nucleus	59.7	47.2
CDY52361	Canola	nucleus	60.07	46.26
Bra010459.1-P	Field mustard	nucleus	60.07	46.26
CDY54084	Canola	nucleus	60.07	46.26
AT5G52040.2	Thale cress	nucleus	60.45	45.38
AT4G25500.4	Thale cress	nucleus	58.96	45.14
CDY32603	Canola	nucleus	58.58	45.11
CDX92711	Canola	nucleus	47.39	41.23
PGSC0003DMT400037012	Potato	nucleus	60.07	40.55
CDY38892	Canola	nucleus	60.82	40.55
Bra029146.1-P	Field mustard	nucleus	60.07	38.52

Protein Annotations

EntrezGene:102593185	MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504
InterPro:IPR012677	UniProt:M1BFD6	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400017052	PGSC:PGSC0003DMG400017052
EnsemblPlants:PGSC0003DMT400043937	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296C4BC	RefSeq:XP_006339478.1	SEG:seg

Description

Splicing factor [Source:PGSC_GENE;Acc:PGSC0003DMG400017052]

Coordinates

chr1:-:71203582..71206893

Molecular Weight (calculated)

31572.0 Da

IEP (calculated)

10.870

GRAVY (calculated)

-1.221

Length

268 amino acids

Sequence
(BLAST)

001: MNGYLTLSLS LKGGKVHNMR AIFCGNLEFD ARQSDVERLF RRYGKVDRVD MKSGFAFVYM EDERDADDAI RRLDRIEFGK KGRRLRVEWT KDRGSRRPEI
101: SRKPAANTRP SKTLFVINFD PVHTQTRDIE KYFEPYGRVS NVRIRKNFAF VQYESVDDAS RALEATNMSK FMDRVISVEF AIRDDDDRRN DRSPDRRGRD
201: MSPDRRGYDR RRSPSPYRRD RGSPDYGRGA PLNSRPQTRR SPEYGRAESP VNERYHSRSP PPRERSRS

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.