CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32603	Canola	nucleus	74.63	86.21
AT5G52040.2	Thale cress	nucleus	73.88	83.19
CDX89418	Canola	nucleus	61.19	72.78
CDY57708	Canola	nucleus	60.2	71.39
CDY54084	Canola	nucleus	60.2	69.54
CDY52361	Canola	nucleus	59.95	69.25
GSMUA_Achr3P12360_001	Banana	nucleus	35.82	69.23
GSMUA_Achr1P03880_001	Banana	nucleus	39.8	66.67
KRH48257	Soybean	nucleus	41.79	66.4
KRH65157	Soybean	nucleus	41.54	66.27
GSMUA_Achr5P10480_001	Banana	nucleus	39.3	65.29
Solyc01g091750.2.1	Tomato	nucleus	34.58	63.76
GSMUA_Achr1P16190_001	Banana	nucleus	27.36	63.22
Os02t0122800-02	Rice	nucleus	43.03	62.01
PGSC0003DMT400043937	Potato	nucleus	40.55	60.82
TraesCS6B01G088500.2	Wheat	nucleus	40.55	58.01
KRH35377	Soybean	endoplasmic reticulum, nucleus	53.73	57.75
TraesCSU01G119700.2	Wheat	nucleus	40.3	57.65
KRG91440	Soybean	nucleus	53.73	57.45
TraesCS6A01G065400.2	Wheat	nucleus	40.3	57.45
EES06200	Sorghum	nucleus	40.8	55.59
Solyc11g072340.1.1	Tomato	nucleus	48.51	55.08
VIT_15s0048g01870.t01	Wine grape	nucleus	42.79	52.12
CDX92711	Canola	nucleus	38.06	49.68
Solyc03g026240.2.1	Tomato	nucleus	41.54	48.69
PGSC0003DMT400037012	Potato	nucleus	45.27	45.84
VIT_16s0100g00450.t01	Wine grape	nucleus	51.99	42.65
CDX81436	Canola	cytosol	6.97	40.0
CDY22958	Canola	cytosol	6.72	38.57
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	25.12	36.59

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:A0A078HLW8	UniProt:A0A078HLW8	EnsemblPlants:CDY38892	ProteinID:CDY38892
ProteinID:CDY38892.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00066739001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EDE0F9	SEG:seg

Description

BnaA03g12870DBnaA03g12870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLW8]

Coordinates

chrLK032434:+:210643..213583

Molecular Weight (calculated)

47020.5 Da

IEP (calculated)

10.406

GRAVY (calculated)

-1.446

Length

402 amino acids

Sequence
(BLAST)

001: MNTATTANTK SEYFFLINFC CQIVGFDCRR PVRAFQPLAK GKMRPVFCGN FEYDAREGDL ERLFRRYGKV DRVDMKAGFA FVYMENERDA EDAIRALDRY
101: EYGRKGRRLR VEWTKNERGA PTRSSGSRRS SSLRPSKTLF VINFDAESTR TRDLERHFEP YGKIVNVRIR RNFAFIQYEL QEDATRALEA TNSSKLMDKV
201: ISVEYAMKDD DARGNGYSPE RRRDRSPDRR RRSPSPYRRE RGSPDYGRGA SPVGHRKERT SPDYGRGRRS PSPYRRARVS PDYKRDDRRR EREASPDYKR
301: DDRRREKEAS PDYKRDDRRR EKEASPENGA VRDRSPRNGR GESRSPPPYE KRRERSRSKS SPENGQVESP GPIMEEEEAG RGYDGAESPI RESHSRSPPA
401: EE

Best Arabidopsis Sequence Match ( AT5G52040.1 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESPSR SPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.