CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48257	Soybean	nucleus	98.02	97.63
Solyc01g091750.2.1	Tomato	nucleus	61.11	70.64
PGSC0003DMT400043937	Potato	nucleus	71.83	67.54
GSMUA_Achr5P10480_001	Banana	nucleus	64.29	66.94
GSMUA_Achr1P03880_001	Banana	nucleus	63.49	66.67
GSMUA_Achr3P12360_001	Banana	nucleus	54.37	65.87
VIT_15s0048g01870.t01	Wine grape	nucleus	78.97	60.3
Os02t0122800-02	Rice	nucleus	66.67	60.22
GSMUA_Achr1P16190_001	Banana	nucleus	41.27	59.77
TraesCS6A01G065400.2	Wheat	nucleus	65.08	58.16
TraesCSU01G119700.2	Wheat	nucleus	64.68	58.01
TraesCS6B01G088500.2	Wheat	nucleus	63.89	57.3
EES06200	Sorghum	nucleus	63.49	54.24
KRH47859	Soybean	nucleus	55.16	53.67
KRH06424	Soybean	nucleus	53.97	51.52
Bra013895.1-P	Field mustard	nucleus	66.67	49.56
CDX89418	Canola	nucleus	66.27	49.41
CDY57708	Canola	nucleus	65.87	48.97
CDY54084	Canola	nucleus	65.87	47.7
CDY52361	Canola	nucleus	65.87	47.7
Bra010459.1-P	Field mustard	nucleus	65.87	47.7
CDY32603	Canola	nucleus	65.08	47.13
AT5G52040.2	Thale cress	nucleus	66.67	47.06
AT4G25500.4	Thale cress	nucleus	65.08	46.86
CDX92711	Canola	nucleus	53.57	43.83
KRG91440	Soybean	nucleus	65.08	43.62
KRH35377	Soybean	endoplasmic reticulum, nucleus	64.68	43.58
CDY38892	Canola	nucleus	66.27	41.54
Bra029146.1-P	Field mustard	nucleus	66.27	39.95

Protein Annotations

EntrezGene:100797778	MapMan:16.4.6.3	Gene3D:3.30.70.330	EMBL:ACUP02001315	EnsemblPlantsGene:GLYMA_03G017200	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:I1JKE8	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH65157	ProteinID:KRH65157
ProteinID:KRH65157.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233A79F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:1735158..1738810

Molecular Weight (calculated)

29495.1 Da

IEP (calculated)

10.619

GRAVY (calculated)

-1.346

Length

252 amino acids

Sequence
(BLAST)

001: MKPVFCGNLD FDARQSDVER LFRRYGKVDR VDMKSGFAFV YMEDERDAEY AIRRLDRTEF GRKGRRIRVE WTKQERDSRR SGGDSRKSSS NSRPSKTLFV
101: INFDPVNART RDLERHFDSY GKILNIRIRR NFAFIQFESQ EDATRALEAT NLSKFMDRVI TVEYAIRDDD DRDRRNGYSP DRRGHDSPDG RYGRGRSPSP
201: YRRGRGSPDY GHGSNPSSRP EPRGSPKYDR AESPINGRYD SRSPPPRDRS RS

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.