Factsheet for GSMUA_Achr1P16190_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	14.94	63.41
GSMUA_Achr5P10480_001	Banana	nucleus	68.97	49.59
GSMUA_Achr1P03880_001	Banana	nucleus	67.24	48.75
GSMUA_Achr3P12360_001	Banana	nucleus	54.6	45.67
Os02t0122800-02	Rice	nucleus	67.24	41.94
KRH65157	Soybean	nucleus	59.77	41.27
KRH48257	Soybean	nucleus	59.77	41.11
PGSC0003DMT400043937	Potato	nucleus	62.64	40.67
TraesCSU01G119700.2	Wheat	nucleus	65.52	40.57
TraesCS6B01G088500.2	Wheat	nucleus	65.52	40.57
TraesCS6A01G065400.2	Wheat	nucleus	65.52	40.43
Solyc01g091750.2.1	Tomato	nucleus	49.43	39.45
VIT_15s0048g01870.t01	Wine grape	nucleus	67.82	35.76
EES06200	Sorghum	nucleus	59.2	34.92
GSMUA_Achr1P03990_001	Banana	nucleus	45.98	32.65
Solyc03g026240.2.1	Tomato	nucleus	63.22	32.07
Solyc11g072340.1.1	Tomato	nucleus	64.94	31.92
CDX89418	Canola	nucleus	61.49	31.66
Bra013895.1-P	Field mustard	nucleus	61.49	31.56
KRH35377	Soybean	endoplasmic reticulum, nucleus	67.82	31.55
KRG91440	Soybean	nucleus	67.82	31.38
CDY57708	Canola	nucleus	60.92	31.27
AT4G25500.4	Thale cress	nucleus	61.49	30.57
AT5G52040.2	Thale cress	nucleus	62.64	30.53
CDY54084	Canola	nucleus	60.92	30.46
CDY52361	Canola	nucleus	60.92	30.46
Bra010459.1-P	Field mustard	nucleus	60.92	30.46
CDY32603	Canola	nucleus	60.34	30.17
PGSC0003DMT400037012	Potato	nucleus	63.22	27.71
CDY38892	Canola	nucleus	63.22	27.36
CDX92711	Canola	nucleus	48.28	27.27
Bra029146.1-P	Field mustard	nucleus	62.07	25.84
GSMUA_Achr11P...	Banana	extracellular, plastid	39.08	24.91
VIT_16s0100g00450.t01	Wine grape	nucleus	67.24	23.88

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G16190_001	EnsemblPlants:GSMUA_Achr1P16190_001
EnsemblPlants:GSMUA_Achr1T16190_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0S0C7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF4	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002955856	SEG:seg	:	:

Description

Putative Arginine/serine-rich-splicing factor RSP41 [Source:GMGC_GENE;Acc:GSMUA_Achr1G16190_001]

Coordinates

chr1:+:12109225..12112022

Molecular Weight (calculated)

20263.8 Da

IEP (calculated)

10.254

GRAVY (calculated)

-1.004

Length

174 amino acids

Sequence
(BLAST)

001: MRPIFCGNFE YDARQSELER LFGRYWKVDR VDMKSGFAFI YMDDERDAGD AIQALDRTEF GRHGQWLHVE WTKLVVVGRS GSSRRSLANM THTKTLFAQE
101: DATKALEATN MRKGLLMDRV ISLEYALRDD DDRRNGYSPK RRRRYRSLAR RGRDSGRTPS PYGRGREKDS PDSG

Best Arabidopsis Sequence Match ( AT5G52040.1 )
(BLAST)

001: MKPVFCGNFE YDARESDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEY GRTGRRLRVE WTKNDRGGAG RSGGSRRSSS GLRPSKTLFV
101: INFDAQNTRT RDLERHFEPY GKIVNVRIRR NFAFIQYEAQ EDATRALDAT NSSKLMDKVI SVEYAVKDDD SRGNGYSPER RRDRSPDRRR RSPSPYRRER
201: GSPDYGRGAS PVAHKRERTS PDYGRGRRSP SPYKRARLSP DYKRDDRRRE RVASPENGAV RNRSPRKGRG ESRSPPPYEK RRESRSPPPY EKRRESRSPP
301: PYEKRRERSR SRSKSSPENG QVESPGQIME VEAGRGYDGA DSPIRESPSR SPPAEE

Arabidopsis Description

ATRSP41RNA-binding (RRM/RBD/RNP motifs) family protein [Source:TAIR;Acc:AT5G52040]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.