CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013895.1-P	Field mustard	nucleus	97.94	97.94
CDX89418	Canola	nucleus	94.69	94.97
CDY52361	Canola	nucleus	85.84	83.62
CDY54084	Canola	nucleus	82.01	79.89
AT4G25500.4	Thale cress	nucleus	81.12	78.57
GSMUA_Achr3P12360_001	Banana	nucleus	43.07	70.19
CDY32603	Canola	nucleus	67.85	66.09
KRH65157	Soybean	nucleus	48.97	65.87
KRH48257	Soybean	nucleus	48.97	65.61
GSMUA_Achr1P03880_001	Banana	nucleus	46.31	65.42
Solyc01g091750.2.1	Tomato	nucleus	41.59	64.68
GSMUA_Achr5P10480_001	Banana	nucleus	45.72	64.05
Os02t0122800-02	Rice	nucleus	51.33	62.37
GSMUA_Achr1P16190_001	Banana	nucleus	31.27	60.92
CDY38892	Canola	nucleus	71.39	60.2
PGSC0003DMT400043937	Potato	nucleus	47.49	60.07
TraesCS6B01G088500.2	Wheat	nucleus	48.97	59.07
TraesCSU01G119700.2	Wheat	nucleus	48.67	58.72
TraesCS6A01G065400.2	Wheat	nucleus	48.67	58.51
EES06200	Sorghum	nucleus	49.26	56.61
CDX92711	Canola	nucleus	48.97	53.9
KRH35377	Soybean	endoplasmic reticulum, nucleus	58.7	53.21
KRG91440	Soybean	nucleus	58.7	52.93
Solyc11g072340.1.1	Tomato	nucleus	54.28	51.98
VIT_15s0048g01870.t01	Wine grape	nucleus	48.67	50.0
Solyc03g026240.2.1	Tomato	nucleus	49.56	48.98
PGSC0003DMT400037012	Potato	nucleus	51.62	44.08
CDX81436	Canola	cytosol	8.55	41.43
VIT_16s0100g00450.t01	Wine grape	nucleus	59.59	41.22
CDY22958	Canola	cytosol	8.26	40.0
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	28.32	34.78

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:A0A078IZ88	UniProt:A0A078IZ88	EnsemblPlants:CDY57708	ProteinID:CDY57708
ProteinID:CDY57708.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00022553001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEF867	SEG:seg

Description

BnaC01g41640DBnaC01g41640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZ88]

Coordinates

chrLK033597:+:30754..33647

Molecular Weight (calculated)

39323.5 Da

IEP (calculated)

10.844

GRAVY (calculated)

-1.550

Length

339 amino acids

Sequence
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGRVER VDMKAGFAFV YMENERDADD AIRGLDRIEF GRKGRRLRVE WTKGERGGDR RTGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLERHFEP YGKIVNVRIR RNFAFIQYEE QEDATRALEA TNNSKLMDKV ISVEYAMKDD DARGNGQSPD RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGG SPVAAYRKER TSPDYGRRRS PSPYKRSRRM SPEYGRDRRG NESPRRRERV ASPNEKRERR SPDDSPFKKE SPKNGGGEVE SPRRERSRSR
301: SSPENGQVES PSSIGRRDSD DGAESPMQKS RSRSPPAEE

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.