CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65157	Soybean	nucleus	43.83	53.57
KRH48257	Soybean	nucleus	43.51	52.96
GSMUA_Achr1P03880_001	Banana	nucleus	39.94	51.25
GSMUA_Achr5P10480_001	Banana	nucleus	38.96	49.59
Solyc01g091750.2.1	Tomato	nucleus	34.74	49.08
GSMUA_Achr3P12360_001	Banana	nucleus	33.12	49.04
CDY57708	Canola	nucleus	53.9	48.97
CDX89418	Canola	nucleus	53.57	48.82
GSMUA_Achr1P16190_001	Banana	nucleus	27.27	48.28
CDY54084	Canola	nucleus	53.57	47.41
CDY52361	Canola	nucleus	53.57	47.41
PGSC0003DMT400043937	Potato	nucleus	41.23	47.39
TraesCS6B01G088500.2	Wheat	nucleus	42.53	46.62
Os02t0122800-02	Rice	nucleus	42.21	46.59
TraesCSU01G119700.2	Wheat	nucleus	42.21	46.26
TraesCS6A01G065400.2	Wheat	nucleus	42.21	46.1
AT4G25500.4	Thale cress	nucleus	51.95	45.71
CDY32603	Canola	nucleus	50.65	44.83
EES06200	Sorghum	nucleus	39.94	41.69
VIT_15s0048g01870.t01	Wine grape	nucleus	42.53	39.7
Solyc03g026240.2.1	Tomato	nucleus	43.51	39.07
CDY38892	Canola	nucleus	49.68	38.06
Solyc11g072340.1.1	Tomato	nucleus	43.51	37.85
KRH35377	Soybean	endoplasmic reticulum, nucleus	44.48	36.63
KRG91440	Soybean	nucleus	44.48	36.44
CDX81436	Canola	cytosol	8.12	35.71
CDY22958	Canola	cytosol	7.79	34.29
PGSC0003DMT400037012	Potato	nucleus	43.83	34.01
VIT_16s0100g00450.t01	Wine grape	nucleus	46.75	29.39
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	25.0	27.9

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:A0A078DTV7	EnsemblPlants:CDX92711	ProteinID:CDX92711	ProteinID:CDX92711.1
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00154529001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0004EEB8DE	SEG:seg	:	:

Description

BnaC07g39690D

Coordinates

chrLK031873:+:460068..461623

Molecular Weight (calculated)

35265.5 Da

IEP (calculated)

10.374

GRAVY (calculated)

-1.012

Length

308 amino acids

Sequence
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFGKHGKVDR VDMKAALWEQ HTLDYKPCIF AVYVACGEAI RSLPSAMAGG KSERYFCSGF AFEYIDNERD AEDAIQGLDR
101: IEFGRKGRRL RVEWTKGERG GDRRSGGGDS RISSSSMRPS KALFVINFDA ENTRTRDLER HFEPYGKIVN VRIRRNFVFV QYEEHEDATR ALAATNNLLV
201: LRDALNGEGG HLVLAKRKRG SPDYGRGGSP VAAYRKERTS PGYGRRRSPS PPYKRSRRGS PEYGESPRRR ERNSRSPDNK RKTLKKESPS GEVESPTERR
301: GRWRLQWC

Best Arabidopsis Sequence Match ( AT4G25500.1 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.