CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35377	Soybean	endoplasmic reticulum, nucleus	96.28	96.79
GSMUA_Achr1P03880_001	Banana	nucleus	45.21	70.83
GSMUA_Achr5P10480_001	Banana	nucleus	44.95	69.83
GSMUA_Achr3P12360_001	Banana	nucleus	38.3	69.23
GSMUA_Achr1P16190_001	Banana	nucleus	31.38	67.82
KRH48257	Soybean	nucleus	44.15	65.61
KRH65157	Soybean	nucleus	43.62	65.08
Os02t0122800-02	Rice	nucleus	45.21	60.93
CDY54084	Canola	nucleus	56.12	60.63
CDX89418	Canola	nucleus	54.26	60.35
CDY52361	Canola	nucleus	54.79	59.2
Bra010459.1-P	Field mustard	nucleus	54.79	59.2
CDY57708	Canola	nucleus	52.93	58.7
Bra013895.1-P	Field mustard	nucleus	52.93	58.7
AT4G25500.4	Thale cress	nucleus	53.99	58.0
TraesCS6B01G088500.2	Wheat	nucleus	43.09	57.65
KRH47859	Soybean	nucleus	39.63	57.53
AT5G52040.2	Thale cress	nucleus	54.52	57.42
TraesCSU01G119700.2	Wheat	nucleus	42.82	57.3
CDY32603	Canola	nucleus	52.93	57.18
TraesCS6A01G065400.2	Wheat	nucleus	42.82	57.09
KRH06424	Soybean	nucleus	39.36	56.06
CDY38892	Canola	nucleus	57.45	53.73
Solyc11g072340.1.1	Tomato	nucleus	50.0	53.11
EES06200	Sorghum	nucleus	41.22	52.54
Bra029146.1-P	Field mustard	nucleus	56.91	51.2
Solyc03g026240.2.1	Tomato	nucleus	45.21	49.56
VIT_16s0100g00450.t01	Wine grape	nucleus	60.37	46.33
PGSC0003DMT400037012	Potato	nucleus	48.14	45.59
CDX92711	Canola	nucleus	36.44	44.48

Protein Annotations

EntrezGene:100781534	MapMan:16.4.6.3	Gene3D:3.30.70.330	EMBL:ACUP02012684	EnsemblPlantsGene:GLYMA_20G155400	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	UniProt:I1NGP9	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRG91440	ProteinID:KRG91440
ProteinID:KRG91440.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233DE1C
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:39421346..39425505

Molecular Weight (calculated)

43268.7 Da

IEP (calculated)

10.571

GRAVY (calculated)

-1.533

Length

376 amino acids

Sequence
(BLAST)

001: MQQGKMRPIF CGNFEYDARQ SELERLFRRY GKVDRVDMKS GFAFIYMEDE RDAEAAIRAL DRVEFGRKGR RLRVEWTKHE RGVRKPASSR RSSANGRPSK
101: TLFVINFDTY HTRTRDLERH FEPYGKIVSV RIRRNFAFVQ YESEDDASRA LEATNMSKLL DRVISVEFAV KDDDDRRNGY SPERGRDRHR DRSRDGRRSP
201: SPYRRERGSP DYGRGPSPYQ RERGSPDYGR DRDRSRSRSP PRRERASPAY GRRSLSPHRR EREGSEPVRD SSRSPYHKER GRTDHGISPS QSPEGRGKKS
301: PQNGHGSSRS PHDTGKTSPE NGLGSGSPDE KGNPSPYNGY GGSPNNMPDP RDSPNYGGPE SPMHERYRSQ SPPAEE

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.