Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P03880_001 | Banana | nucleus | 35.1 | 71.67 |
| GSMUA_Achr3P12360_001 | Banana | nucleus | 30.41 | 71.63 |
| GSMUA_Achr5P10480_001 | Banana | nucleus | 34.49 | 69.83 |
| GSMUA_Achr1P16190_001 | Banana | nucleus | 23.88 | 67.24 |
| Os02t0122800-02 | Rice | nucleus | 36.33 | 63.8 |
| VIT_15s0046g00050.t01 | Wine grape | nucleus | 4.9 | 61.54 |
| TraesCSU01G119700.2 | Wheat | nucleus | 35.1 | 61.21 |
| TraesCS6A01G065400.2 | Wheat | nucleus | 35.1 | 60.99 |
| KRH35377 | Soybean | endoplasmic reticulum, nucleus | 46.33 | 60.7 |
| TraesCS6B01G088500.2 | Wheat | nucleus | 34.69 | 60.5 |
| KRG91440 | Soybean | nucleus | 46.33 | 60.37 |
| AT4G25500.4 | Thale cress | nucleus | 43.06 | 60.29 |
| CDY54084 | Canola | nucleus | 42.65 | 60.06 |
| CDY52361 | Canola | nucleus | 42.45 | 59.77 |
| Bra010459.1-P | Field mustard | nucleus | 42.45 | 59.77 |
| CDX89418 | Canola | nucleus | 41.22 | 59.76 |
| CDY57708 | Canola | nucleus | 41.22 | 59.59 |
| Bra013895.1-P | Field mustard | nucleus | 41.02 | 59.29 |
| EES06200 | Sorghum | nucleus | 35.31 | 58.64 |
| Solyc11g072340.1.1 | Tomato | nucleus | 41.63 | 57.63 |
| VIT_15s0048g01870.t01 | Wine grape | nucleus | 38.78 | 57.58 |
| CDY32603 | Canola | nucleus | 40.61 | 57.18 |
| AT5G52040.2 | Thale cress | nucleus | 41.22 | 56.58 |
| VIT_15s0046g00060.t01 | Wine grape | endoplasmic reticulum | 25.31 | 55.36 |
| CDY38892 | Canola | nucleus | 42.65 | 51.99 |
| Solyc03g026240.2.1 | Tomato | nucleus | 35.92 | 51.31 |
| PGSC0003DMT400037012 | Potato | nucleus | 40.41 | 49.87 |
| Bra029146.1-P | Field mustard | nucleus | 41.43 | 48.56 |
| CDX92711 | Canola | nucleus | 29.39 | 46.75 |
Protein Annotations
| EntrezGene:100255597 | wikigene:100255597 | MapMan:16.4.6.3 | Gene3D:3.30.70.330 | EMBL:AM437383 | ProteinID:CAN82624 |
| ProteinID:CAN82624.1 | ProteinID:CCB56472 | ProteinID:CCB56472.1 | UniProt:F6HP66 | EMBL:FN596000 | GO:GO:0000398 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | EntrezGene:LOC100255597 | wikigene:LOC100255597 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44257 | PANTHER:PTHR44257:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RSP31/31A/40/41 | SMART:SM00360 | SUPFAM:SSF54928 | TIGR:TC55613 | UniParc:UPI000210882A | ArrayExpress:VIT_16s0100g00450 |
| EnsemblPlantsGene:VIT_16s0100g00450 | EnsemblPlants:VIT_16s0100g00450.t01 | unigene:Vvi.711 | RefSeq:XP_002279907 | RefSeq:XP_002279907.2 | RefSeq:XP_010662522.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:+:15902854..15908357
Molecular Weight (calculated)
56981.5 Da
IEP (calculated)
10.955
GRAVY (calculated)
-1.621
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPLDLENFP VKMRPIFCGN FDYDARQSDL ERLFRRYGKV DRVDMKTGFA FIYMEDERDA EDAIRGLDRT GFGRKGRRLR VEWTKQERGI RRPSGSRRSS
101: TNLRPAKTLF VINFDPYNTR TRDLERHFDP YGKILNIRIR RNFAFIQYES QEDATRALEA TNMSKLMDRV ISVEYAVRDD DERRNGYSPD GRRRDKSSER
201: SYDKGRSLSP YRRERGSPDY GRGSSPSAYR RERASPDYGR DPSPSPRRRD RAIPDHGRSR SPSHHRRERT SHDSARGPSR SPYRSERSDR AIPDYGRGRS
301: PSPGRREKIM PDYPDRPSLS PERKEKTGRS EKAIPDYGRG ASPSSPRRER TNSDYVRANS RSRSRSQSQS PRQRERTKPD YGHERSVSPE QREKANPDYG
401: RGPSRSSPRR EYDRGPSQSP QQGERALPDY SRGPSDSPYQ RESISPDYDR GPSPNSKREE RDSPNYGGSA SPMNGRYRSR SPPARERSRS
101: TNLRPAKTLF VINFDPYNTR TRDLERHFDP YGKILNIRIR RNFAFIQYES QEDATRALEA TNMSKLMDRV ISVEYAVRDD DERRNGYSPD GRRRDKSSER
201: SYDKGRSLSP YRRERGSPDY GRGSSPSAYR RERASPDYGR DPSPSPRRRD RAIPDHGRSR SPSHHRRERT SHDSARGPSR SPYRSERSDR AIPDYGRGRS
301: PSPGRREKIM PDYPDRPSLS PERKEKTGRS EKAIPDYGRG ASPSSPRRER TNSDYVRANS RSRSRSQSQS PRQRERTKPD YGHERSVSPE QREKANPDYG
401: RGPSRSSPRR EYDRGPSQSP QQGERALPDY SRGPSDSPYQ RESISPDYDR GPSPNSKREE RDSPNYGGSA SPMNGRYRSR SPPARERSRS
001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE
Arabidopsis Description
RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.