Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 53.85 | 51.22 |
| TraesCSU01G114200.1 | Wheat | nucleus | 66.67 | 9.63 |
| TraesCS5A01G555800.1 | Wheat | nucleus | 66.67 | 9.63 |
| TraesCS4B01G398900.1 | Wheat | nucleus | 66.67 | 9.52 |
| Zm00001d048505_P001 | Maize | nucleus | 61.54 | 9.41 |
| GSMUA_Achr1P03990_001 | Banana | nucleus | 58.97 | 9.39 |
| HORVU4Hr1G088790.4 | Barley | nucleus | 66.67 | 9.39 |
| EER92984 | Sorghum | nucleus | 61.54 | 9.02 |
| EES11769 | Sorghum | nucleus | 51.28 | 8.4 |
| TraesCS2A01G009400.2 | Wheat | nucleus | 51.28 | 8.16 |
| TraesCS2D01G010300.1 | Wheat | nucleus | 51.28 | 7.91 |
| Os04t0118900-01 | Rice | nucleus | 48.72 | 7.76 |
| Zm00001d025063_P002 | Maize | cytosol | 51.28 | 7.46 |
| Zm00001d004477_P005 | Maize | cytosol | 53.85 | 6.98 |
| VIT_15s0048g01870.t01 | Wine grape | nucleus | 53.85 | 6.36 |
| VIT_16s0100g00450.t01 | Wine grape | nucleus | 61.54 | 4.9 |
| VIT_15s0046g00060.t01 | Wine grape | endoplasmic reticulum | 2.56 | 0.45 |
| HORVU3Hr1G039480.2 | Barley | cytosol, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.2 | ProteinID:CCB62561 | ProteinID:CCB62561.1 | UniProt:F6I6G5 | EMBL:FN596755 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PANTHER:PTHR44257 |
| PANTHER:PTHR44257:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RSP31/31A/40/41 | SUPFAM:SSF54928 | UniParc:UPI0002109C22 |
| ArrayExpress:VIT_15s0046g00050 | EnsemblPlantsGene:VIT_15s0046g00050 | EnsemblPlants:VIT_15s0046g00050.t01 | : | : | : |
Description
No Description!
Coordinates
chr15:+:17139611..17141212
Molecular Weight (calculated)
4716.6 Da
IEP (calculated)
8.213
GRAVY (calculated)
-0.387
Length
39 amino acids
Sequence
(BLAST)
(BLAST)
1: MRPIFCGNFE YETRQSDLER LFSKYGRVER MASSCIFFT
001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
Arabidopsis Description
RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.