Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G010300.1 | Wheat | nucleus | 97.55 | 94.47 |
| HORVU3Hr1G039480.2 | Barley | cytosol, nucleus | 22.45 | 90.16 |
| Os04t0118900-01 | Rice | nucleus | 81.63 | 81.63 |
| EES11769 | Sorghum | nucleus | 74.29 | 76.47 |
| Zm00001d025063_P002 | Maize | cytosol | 73.06 | 66.79 |
| GSMUA_Achr1P03990_001 | Banana | nucleus | 63.67 | 63.67 |
| Zm00001d004477_P005 | Maize | cytosol | 73.06 | 59.47 |
| Solyc01g096180.2.1 | Tomato | nucleus | 58.78 | 58.78 |
| KRH47859 | Soybean | nucleus | 61.63 | 58.3 |
| Solyc10g009330.2.1 | Tomato | nucleus | 48.98 | 57.97 |
| PGSC0003DMT400000674 | Potato | nucleus | 56.33 | 57.5 |
| KRH06424 | Soybean | nucleus | 61.22 | 56.82 |
| PGSC0003DMT400048580 | Potato | extracellular, nucleus | 58.37 | 56.75 |
| AT3G61860.1 | Thale cress | nucleus | 60.0 | 55.68 |
| AT2G46610.1 | Thale cress | nucleus | 56.73 | 55.6 |
| VIT_15s0046g00050.t01 | Wine grape | nucleus | 8.16 | 51.28 |
| TraesCS6A01G065400.2 | Wheat | nucleus | 57.96 | 50.35 |
| TraesCS5A01G555800.1 | Wheat | nucleus | 52.65 | 47.78 |
| CDY22958 | Canola | cytosol | 11.84 | 41.43 |
| CDX81436 | Canola | cytosol | 11.43 | 40.0 |
| CDX71702 | Canola | endoplasmic reticulum, extracellular, nucleus | 37.14 | 32.97 |
Protein Annotations
| MapMan:16.4.6.3 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44257 | PANTHER:PTHR44257:SF3 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RS31 | InterPro:RSP31/31A/40/41 | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2A01G009400 | EnsemblPlants:TraesCS2A01G009400.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:3797474..3800866
Molecular Weight (calculated)
28638.2 Da
IEP (calculated)
10.144
GRAVY (calculated)
-1.123
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPVFVGNLD YDTRHSELDR LFYRYGRIER IDMKSGFAFV YFEDERDGDD AIRALDGYPF GPGRRRLSVE WSRGDRGTRR DDRDGYSKPP VNTKPTKTLF
101: VINFDPINTR VSDLERHFGH FGRISNVRIR KNFAFVQFET QEEATKALDA THLTKLLDRV ISVEYAFRDD SEPGDKYDRP SRGGGYGRQD DSSYRRSVSP
201: MYRRSRPSPD YGRPASPQYG AYGRSRSPVR DRYRRSPAPN RRGYD
101: VINFDPINTR VSDLERHFGH FGRISNVRIR KNFAFVQFET QEEATKALDA THLTKLLDRV ISVEYAFRDD SEPGDKYDRP SRGGGYGRQD DSSYRRSVSP
201: MYRRSRPSPD YGRPASPQYG AYGRSRSPVR DRYRRSPAPN RRGYD
001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP
Arabidopsis Description
RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.