Factsheet for Zm00001d025063_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11769	Sorghum	nucleus	80.97	91.18
TraesCS2A01G009400.2	Wheat	nucleus	66.79	73.06
Os04t0118900-01	Rice	nucleus	66.42	72.65
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	16.42	72.13
Zm00001d004477_P005	Maize	cytosol	80.6	71.76
TraesCS2D01G010300.1	Wheat	nucleus	65.67	69.57
GSMUA_Achr1P03990_001	Banana	nucleus	54.85	60.0
VIT_15s0046g00050.t01	Wine grape	nucleus	7.46	51.28
Zm00001d048505_P001	Maize	nucleus	48.51	50.98
Zm00001d004425_P001	Maize	cytosol	19.4	42.62

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	EntrezGene:542174	UniProt:A0A1D6J4J9	ProteinID:AQK42888.1	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44257	PANTHER:PTHR44257:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RS31	InterPro:RSP31/31A/40/41
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0008436B28	EnsemblPlantsGene:Zm00001d025063	EnsemblPlants:Zm00001d025063_P002	EnsemblPlants:Zm00001d025063_T002
SEG:seg	:	:	:	:	:

Description

Serine/arginine-rich splicing factor RS31A

Coordinates

chr10:-:102254458..102258361

Molecular Weight (calculated)

31064.6 Da

IEP (calculated)

10.312

GRAVY (calculated)

-0.782

Length

268 amino acids

Sequence
(BLAST)

001: MRPVFVGNLD YDTRHSELDH LFYRYGRVER IDMKSGCPPL LLPTPRFVVV FGRFRCSTFL ILLGFAFVYF EDERDGSDAI RALDGYPFGP GRRRLSVEWS
101: RGDRAARRDG NKPEVNTKPT KTLFVINFDP MDTRVSDIER HFAPFGNISS VRIRKNFAFV RFETLEEARK ALEATHATML LDRVISVEYA FRDDDERSDR
201: YDSPRRGGGY GRRGDSPAYR SRPSPDYGRP ASPVYGSYGR SRSPVRDRYR RSPAYRSRSP PANRRAYD

Best Arabidopsis Sequence Match ( AT2G46610.1 )
(BLAST)

001: MRHVYVGNFD YDTRHSDLER LFSKFGRVKR VDMKSGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG

Arabidopsis Description

RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.