Factsheet for Zm00001d048505_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92984	Sorghum	nucleus	79.22	75.94
TraesCS4B01G398900.1	Wheat	nucleus	68.63	64.1
TraesCS5A01G555800.1	Wheat	nucleus	67.45	63.7
VIT_15s0046g00050.t01	Wine grape	nucleus	9.41	61.54
GSMUA_Achr11P...	Banana	nucleus	9.8	60.98
TraesCSU01G114200.1	Wheat	nucleus	64.31	60.74
HORVU4Hr1G088790.4	Barley	nucleus	63.53	58.48
Zm00001d025063_P002	Maize	cytosol	50.98	48.51
Zm00001d004477_P005	Maize	cytosol	51.37	43.52
Zm00001d004425_P001	Maize	cytosol	12.94	27.05

Protein Annotations

EntrezGene:100192821	MapMan:16.4.6.3	Gene3D:3.30.70.330	ProteinID:AQL09959.1	ProteinID:AQL09960.1	UniProt:B4FCS1
EMBL:BT034909	EMBL:BT068569	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF2	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B67FD	EnsemblPlantsGene:Zm00001d048505
EnsemblPlants:Zm00001d048505_P001	EnsemblPlants:Zm00001d048505_T001	SEG:seg	:	:	:

Description

Serine/arginine-rich splicing factor RS31A

Coordinates

chr9:+:157486024..157489557

Molecular Weight (calculated)

30378.3 Da

IEP (calculated)

9.683

GRAVY (calculated)

-1.177

Length

255 amino acids

Sequence
(BLAST)

001: MRPVFCGNFD HDTRQYDLER LFSKYGPISR IDMKLGYAFI YFEDERDAED AIRRLDNVSF GYNRRRLSVE WSRQVEPVPK SRDRPTGDVK PTRTLFVINF
101: DPIRTKVQDI EKHFEPYGKI ANIRIRRNFA FVQYETQEEA SAAVKNTDKS TILDRVVTVE YAFRDDDGDR DDRYDIPKQG AYDRRGGSPY MRSPSPRYRR
201: DYVPDYGRRG RYPGYGRRDG AMYERRSPVY DRYGGGRSPA YDRYDRRRSP GYDQY

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.