Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G398900.1 | Wheat | nucleus | 88.89 | 87.91 |
| TraesCS5A01G555800.1 | Wheat | nucleus | 84.44 | 84.44 |
| HORVU4Hr1G088790.4 | Barley | nucleus | 81.48 | 79.42 |
| VIT_15s0046g00050.t01 | Wine grape | nucleus | 9.63 | 66.67 |
| EER92984 | Sorghum | nucleus | 63.7 | 64.66 |
| Zm00001d048505_P001 | Maize | nucleus | 60.74 | 64.31 |
| GSMUA_Achr11P... | Banana | nucleus | 9.26 | 60.98 |
| PGSC0003DMT400000674 | Potato | nucleus | 51.48 | 57.92 |
| Solyc01g096180.2.1 | Tomato | nucleus | 49.26 | 54.29 |
| KRH47859 | Soybean | nucleus | 51.11 | 53.28 |
| Solyc10g009330.2.1 | Tomato | nucleus | 40.74 | 53.14 |
| KRH06424 | Soybean | nucleus | 51.85 | 53.03 |
| AT3G61860.1 | Thale cress | nucleus | 51.85 | 53.03 |
| PGSC0003DMT400048580 | Potato | extracellular, nucleus | 49.26 | 52.78 |
| AT2G46610.1 | Thale cress | nucleus | 47.41 | 51.2 |
| TraesCSU01G119700.2 | Wheat | nucleus | 48.89 | 46.98 |
| CDY22958 | Canola | cytosol | 10.74 | 41.43 |
| CDX81436 | Canola | cytosol | 10.74 | 41.43 |
| CDX71702 | Canola | endoplasmic reticulum, extracellular, nucleus | 34.44 | 33.7 |
Protein Annotations
| MapMan:16.4.6.3 | Gene3D:3.30.70.330 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44257 | PANTHER:PTHR44257:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RSP31/31A/40/41 | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCSU01G114200 | EnsemblPlants:TraesCSU01G114200.1 | SEG:seg |
Description
No Description!
Coordinates
chrUn:+:99090836..99093783
Molecular Weight (calculated)
31611.5 Da
IEP (calculated)
10.214
GRAVY (calculated)
-1.309
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPVFCGNFD YETRQSDLER LFSKYGPIRR IDMKSGYAFV YFQDERDAED AIRRLSNAEF GHTSRRLSVE WSRQEEPVPK NRDRPTGADA KPTRTLFVIN
101: FDPIRTKVVD IERHFEPYGK IANIRIRKNF AFVQYEAQED ASIAVNKTDK STILDRVVTV EYAFRDDDNE RDDRHGSPRR GGDRYGSPRR GGDRYGSPRR
201: GGDRYSSPKR ADQGRRPYVR SPSPRYRSPD YDRRPRNSGY DGRDGAPYGR SRSPVYDRYE RGRSPGYGRY
101: FDPIRTKVVD IERHFEPYGK IANIRIRKNF AFVQYEAQED ASIAVNKTDK STILDRVVTV EYAFRDDDNE RDDRHGSPRR GGDRYGSPRR GGDRYGSPRR
201: GGDRYSSPKR ADQGRRPYVR SPSPRYRSPD YDRRPRNSGY DGRDGAPYGR SRSPVYDRYE RGRSPGYGRY
001: MRHVYVGNFD YDTRHSDLER LFSKFGRVKR VDMKSGYAFV YFEDERDAED AIRRTDNTTF GYGRRKLSVE WAKDFQGERG KPRDGKAVSN QRPTKTLFVI
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
101: NFDPIRTRER DMERHFEPYG KVLNVRMRRN FAFVQFATQE DATKALDSTH NSKLLDKVVS VEYALREAGE REDRYAGSRR RRSPSPVYRR RPSPDYTRRR
201: SPEYDRYKGP APYERRKSPD YGRRSSDYGR ARARSPGYDR SRSPIQRARG
Arabidopsis Description
RS31ASerine/arginine-rich splicing factor RS31A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.