CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76092
CDX83484
CDX95008
CDY02941
CDY07084
CDY10512
CDY14697
CDY22251
CDY23361
CDY24176
CDY44222
CDY66028
CDY72459

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61860.1	CDX95008	AT1G09140.1	21798944
AT3G61860.1	CDY66028	AT1G09140.1	21798944
AT3G61860.1	CDY10512	AT1G53720.1	16497658
AT3G61860.1	CDY72459	AT1G53720.1	16497658
AT3G61860.1	CDX83484	AT2G43370.1	15987817
AT3G61860.1	CDY14697	AT2G43370.1	15987817
AT3G61860.1	CDY22251	AT2G43370.1	15987817
AT3G61860.1	CDY23361	AT2G43370.1	15987817
AT3G61860.1	CDY44222	AT2G43370.1	15987817
AT3G61860.1	CDY07084	AT3G13570.1	18674533
AT3G61860.1	CDY24176	AT3G13570.1	18674533
AT3G61860.1	CDX76092	AT3G55460.1	18674533
AT3G61860.1	CDY02941	AT3G55460.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22958	Canola	cytosol	95.71	95.71
Zm00001d004425_P001	Maize	cytosol	37.14	21.31
AT3G61860.1	Thale cress	nucleus	48.57	12.88
PGSC0003DMT400000674	Potato	nucleus	42.86	12.5
PGSC0003DMT400048580	Potato	extracellular, nucleus	44.29	12.3
KRH47859	Soybean	nucleus	44.29	11.97
Solyc01g096180.2.1	Tomato	nucleus	41.43	11.84
EES11769	Sorghum	nucleus	40.0	11.76
KRH06424	Soybean	nucleus	44.29	11.74
TraesCS2A01G009400.2	Wheat	nucleus	40.0	11.43
AT2G46610.1	Thale cress	nucleus	40.0	11.2
Os04t0118900-01	Rice	nucleus	38.57	11.02
TraesCSU01G114200.1	Wheat	nucleus	41.43	10.74
TraesCS5A01G555800.1	Wheat	nucleus	41.43	10.74
TraesCS4B01G398900.1	Wheat	nucleus	41.43	10.62
HORVU4Hr1G088790.4	Barley	nucleus	40.0	10.11
TraesCS2D01G010300.1	Wheat	nucleus	34.29	9.49
EER92984	Sorghum	nucleus	35.71	9.4
CDX89418	Canola	nucleus	41.43	8.58
CDY57708	Canola	nucleus	41.43	8.55
CDY52361	Canola	nucleus	41.43	8.33
CDY54084	Canola	nucleus	41.43	8.33
CDX92711	Canola	nucleus	35.71	8.12
CDY32603	Canola	nucleus	38.57	7.76
CDY38892	Canola	nucleus	40.0	6.97
Solyc10g009330.2.1	Tomato	nucleus	7.14	2.42
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	4.29	1.09
HORVU3Hr1G039480.2	Barley	cytosol, nucleus	0.0	0.0

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	GO:A0A078CWB4	EnsemblPlants:CDX81436	ProteinID:CDX81436	ProteinID:CDX81436.1
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00135019001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RSP31/31A/40/41
SUPFAM:SSF54928	UniParc:UPI0004EF0383	:	:	:	:

Description

BnaC09g08470D

Coordinates

chrLK031824:+:1774579..1775995

Molecular Weight (calculated)

8006.7 Da

IEP (calculated)

9.606

GRAVY (calculated)

-0.140

Length

70 amino acids

Sequence
(BLAST)

1: MVRKFLEGGG TIDYSIGVAA IRSSSASMRP VFVGNFEYET RQSELERLFR KYGRVERVDM KSGILFTCYV

Best Arabidopsis Sequence Match ( AT3G61860.1 )
(BLAST)

001: MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF
101: DPIRTKEHDI EKHFEPYGKV TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR SLSPVYRRRP SPDYGRRPSP
201: GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS DYGRQRSPGY DRYRSRSPVP RGRP

Arabidopsis Description

RS31RSP31 [Source:UniProtKB/TrEMBL;Acc:A0A178VG60]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.