CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010459.1-P	Field mustard	nucleus	100.0	100.0
CDY54084	Canola	nucleus	88.79	88.79
CDX89418	Canola	nucleus	83.91	86.39
CDY57708	Canola	nucleus	83.62	85.84
AT4G25500.4	Thale cress	nucleus	83.05	82.57
GSMUA_Achr3P12360_001	Banana	nucleus	41.67	69.71
CDY32603	Canola	nucleus	66.09	66.09
KRH65157	Soybean	nucleus	47.7	65.87
KRH48257	Soybean	nucleus	47.7	65.61
GSMUA_Achr1P03880_001	Banana	nucleus	44.83	65.0
Solyc01g091750.2.1	Tomato	nucleus	40.52	64.68
Os02t0122800-02	Rice	nucleus	50.86	63.44
GSMUA_Achr5P10480_001	Banana	nucleus	43.97	63.22
GSMUA_Achr1P16190_001	Banana	nucleus	30.46	60.92
TraesCS6B01G088500.2	Wheat	nucleus	48.85	60.5
TraesCSU01G119700.2	Wheat	nucleus	48.56	60.14
PGSC0003DMT400043937	Potato	nucleus	46.26	60.07
EES06200	Sorghum	nucleus	50.86	60.0
CDY38892	Canola	nucleus	69.25	59.95
TraesCS6A01G065400.2	Wheat	nucleus	48.56	59.93
KRH35377	Soybean	endoplasmic reticulum, nucleus	59.2	55.08
KRG91440	Soybean	nucleus	59.2	54.79
CDX92711	Canola	nucleus	47.41	53.57
Solyc11g072340.1.1	Tomato	nucleus	54.02	53.11
VIT_15s0048g01870.t01	Wine grape	nucleus	48.56	51.21
Solyc03g026240.2.1	Tomato	nucleus	47.7	48.4
PGSC0003DMT400037012	Potato	nucleus	51.15	44.84
VIT_16s0100g00450.t01	Wine grape	nucleus	59.77	42.45
CDX81436	Canola	cytosol	8.33	41.43
CDY22958	Canola	cytosol	8.05	40.0
CDX71702	Canola	endoplasmic reticulum, extracellular, nucleus	27.87	35.14

Protein Annotations

MapMan:16.4.6.3	Gene3D:3.30.70.330	GO:A0A078IR43	UniProt:A0A078IR43	EnsemblPlants:CDY52361	ProteinID:CDY52361
ProteinID:CDY52361.1	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00006795001	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44257	PANTHER:PTHR44257:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RSP31/31A/40/41	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002545A39	SEG:seg

Description

BnaA08g30960DBnaA08g30960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IR43]

Coordinates

chrLK033080:+:57634..60242

Molecular Weight (calculated)

40261.3 Da

IEP (calculated)

10.658

GRAVY (calculated)

-1.561

Length

348 amino acids

Sequence
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGRVER VDMKAGFAFV YMEDERDAED AIRALDRIEF GRKGRRLRVE WTKGERGGDR RSGGGSRRSS SMRPSKTLFV
101: INFDADNTRT RDLERHFEPY GKIVNVRIRR NFAFVQYEEQ EDATRALDAT NNSKLMDKVI SVEYAMKDDD ARGNGHSPER RRDRSPERRR RSPSPYKRER
201: GSPDYGRGGS PVAAYKRERT SPDYGRRRSP SPYKRTRRSS PEYGRDRHRG NESPRRRERG ASPRYSRSPD NKRERVSPDR SPLKKESSQN GDGEVDSPNE
301: RRERSRSSPE NGQVESPGSI GRRDSDGGYD GADSPMQKSR SRSPPAEE

Best Arabidopsis Sequence Match ( AT4G25500.4 )
(BLAST)

001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE

Arabidopsis Description

RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.