Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54084 | Canola | nucleus | 83.43 | 83.91 |
| Bra010459.1-P | Field mustard | nucleus | 82.57 | 83.05 |
| CDY52361 | Canola | nucleus | 82.57 | 83.05 |
| Bra013895.1-P | Field mustard | nucleus | 78.86 | 81.42 |
| CDX89418 | Canola | nucleus | 78.57 | 81.36 |
| CDY57708 | Canola | nucleus | 78.57 | 81.12 |
| GSMUA_Achr3P12360_001 | Banana | nucleus | 41.14 | 69.23 |
| AT5G52040.2 | Thale cress | nucleus | 67.71 | 66.39 |
| KRH65157 | Soybean | nucleus | 46.86 | 65.08 |
| GSMUA_Achr1P03880_001 | Banana | nucleus | 44.57 | 65.0 |
| KRH48257 | Soybean | nucleus | 46.86 | 64.82 |
| GSMUA_Achr5P10480_001 | Banana | nucleus | 44.0 | 63.64 |
| Solyc01g091750.2.1 | Tomato | nucleus | 39.14 | 62.84 |
| GSMUA_Achr1P16190_001 | Banana | nucleus | 30.57 | 61.49 |
| Os02t0122800-02 | Rice | nucleus | 48.0 | 60.22 |
| PGSC0003DMT400043937 | Potato | nucleus | 45.14 | 58.96 |
| TraesCS6B01G088500.2 | Wheat | nucleus | 47.14 | 58.72 |
| TraesCSU01G119700.2 | Wheat | nucleus | 46.86 | 58.36 |
| TraesCS6A01G065400.2 | Wheat | nucleus | 46.86 | 58.16 |
| AT3G61860.1 | Thale cress | nucleus | 41.71 | 55.3 |
| EES06200 | Sorghum | nucleus | 46.0 | 54.58 |
| KRG91440 | Soybean | nucleus | 58.0 | 53.99 |
| KRH35377 | Soybean | endoplasmic reticulum, nucleus | 57.43 | 53.74 |
| AT2G46610.1 | Thale cress | nucleus | 38.0 | 53.2 |
| CDX92711 | Canola | nucleus | 45.71 | 51.95 |
| VIT_15s0048g01870.t01 | Wine grape | nucleus | 48.0 | 50.91 |
| Solyc11g072340.1.1 | Tomato | nucleus | 50.57 | 50.0 |
| Solyc03g026240.2.1 | Tomato | nucleus | 46.0 | 46.94 |
| PGSC0003DMT400037012 | Potato | nucleus | 50.0 | 44.08 |
| VIT_16s0100g00450.t01 | Wine grape | nucleus | 60.29 | 43.06 |
Protein Annotations
| MapMan:16.4.6.3 | Gene3D:3.30.70.330 | EntrezGene:828654 | ProteinID:AEE85067.1 | ProteinID:AEE85069.1 | ProteinID:AEE85070.1 |
| EMBL:AK317023 | EMBL:AK317405 | ProteinID:ANM66707.1 | ArrayExpress:AT4G25500 | EnsemblPlantsGene:AT4G25500 | RefSeq:AT4G25500 |
| TAIR:AT4G25500 | RefSeq:AT4G25500-TAIR-G | EnsemblPlants:AT4G25500.4 | TAIR:AT4G25500.4 | Symbol:ATRSP35 | Unigene:At.10187 |
| ProteinID:CAA18176.1 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
| GO:GO:0005681 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008380 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010445 | GO:GO:0016607 | GO:GO:0019538 |
| GO:GO:0031053 | GO:GO:0040029 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001078447.1 | RefSeq:NP_001190837.1 |
| RefSeq:NP_001328587.1 | RefSeq:NP_194280.1 | InterPro:Nucleotide-bd_a/b_plait_sf | UniProt:P92965 | PFAM:PF00076 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50102 | PANTHER:PTHR44257 | PANTHER:PTHR44257:SF1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RSP31/31A/40/41 |
| Symbol:RSP35 | SMART:SM00360 | SUPFAM:SSF54928 | EMBL:U76607 | UniParc:UPI0000134FC5 | EMBL:X99437 |
| SEG:seg | : | : | : | : | : |
Description
RS40Serine/arginine-rich splicing factor RS40 [Source:UniProtKB/Swiss-Prot;Acc:P92965]
Coordinates
chr4:+:13024598..13027484
Molecular Weight (calculated)
40321.7 Da
IEP (calculated)
10.758
GRAVY (calculated)
-1.472
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE
101: VINFDADNTR TRDLEKHFEP YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE RRRDRSPERR RRSPSPYKRE
201: RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI
301: ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.